Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIS81_RS07940 Genome accession   NZ_CP085399
Coordinates   1522709..1523311 (-) Length   200 a.a.
NCBI ID   WP_226640128.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517709..1528311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS07920 (LIS81_07930) dnaD 1518025..1518732 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  LIS81_RS07925 (LIS81_07935) nth 1518748..1519395 (+) 648 WP_000933027.1 endonuclease III -
  LIS81_RS07930 (LIS81_07940) - 1519399..1519917 (+) 519 WP_000442667.1 YpoC family protein -
  LIS81_RS07935 (LIS81_07945) - 1519941..1522643 (-) 2703 WP_226640127.1 PBP1A family penicillin-binding protein -
  LIS81_RS07940 (LIS81_07950) recU 1522709..1523311 (-) 603 WP_226640128.1 Holliday junction resolvase RecU Machinery gene
  LIS81_RS07945 (LIS81_07955) - 1523415..1524440 (+) 1026 WP_226640129.1 DUF2515 domain-containing protein -
  LIS81_RS07950 (LIS81_07960) - 1524697..1524873 (-) 177 WP_002020884.1 hypothetical protein -
  LIS81_RS07955 (LIS81_07965) - 1524959..1525201 (+) 243 WP_226640130.1 hypothetical protein -
  LIS81_RS07960 (LIS81_07970) - 1525217..1525561 (+) 345 WP_226640131.1 YppE family protein -
  LIS81_RS07965 (LIS81_07975) - 1525586..1525777 (-) 192 WP_000242660.1 YppF family protein -
  LIS81_RS07970 (LIS81_07980) - 1525955..1526455 (+) 501 WP_000487702.1 YppG family protein -
  LIS81_RS07975 (LIS81_07985) - 1526610..1527032 (+) 423 WP_000546264.1 CotD family spore coat protein -
  LIS81_RS07980 (LIS81_07990) - 1527089..1527643 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  LIS81_RS07985 (LIS81_07995) gpsB 1527741..1528079 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5601

>NTDB_id=617722 LIS81_RS07940 WP_226640128.1 1522709..1523311(-) (recU) [Bacillus tropicus strain CK18]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCSYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=617722 LIS81_RS07940 WP_226640128.1 1522709..1523311(-) (recU) [Bacillus tropicus strain CK18]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCCAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGGTCTTTATTATCATGCAGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62

100

0.62