Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIS81_RS00220 Genome accession   NZ_CP085399
Coordinates   40396..40680 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain CK18     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35396..45680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS00185 (LIS81_00185) tmk 35550..36176 (+) 627 WP_000677229.1 dTMP kinase -
  LIS81_RS00190 (LIS81_00190) holB 36212..37195 (+) 984 WP_242276744.1 DNA polymerase III subunit delta' -
  LIS81_RS00195 (LIS81_00195) - 37201..38028 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  LIS81_RS00200 (LIS81_00200) yabA 38043..38393 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  LIS81_RS00205 (LIS81_00205) - 38514..39254 (+) 741 WP_103625458.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIS81_RS00210 (LIS81_00210) - 39241..39531 (+) 291 WP_139869781.1 GIY-YIG nuclease family protein -
  LIS81_RS00215 (LIS81_00215) rsmI 39500..40375 (+) 876 WP_226641270.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIS81_RS00220 (LIS81_00220) abrB 40396..40680 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIS81_RS00225 (LIS81_00225) metG 41199..43181 (+) 1983 WP_000134149.1 methionine--tRNA ligase -
  LIS81_RS00230 (LIS81_00230) - 43348..44115 (+) 768 WP_000895831.1 TatD family hydrolase -
  LIS81_RS00235 (LIS81_00235) rnmV 44332..44889 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=617705 LIS81_RS00220 WP_000843036.1 40396..40680(-) (abrB) [Bacillus tropicus strain CK18]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=617705 LIS81_RS00220 WP_000843036.1 40396..40680(-) (abrB) [Bacillus tropicus strain CK18]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851