Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LIT29_RS14465 Genome accession   NZ_CP085398
Coordinates   2765973..2767016 (-) Length   347 a.a.
NCBI ID   WP_048006066.1    Uniprot ID   A0A165JA74
Organism   Rossellomorea marisflavi strain F17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760973..2772016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS14420 (LIT29_14445) - 2761285..2762070 (+) 786 WP_252264868.1 YqhG family protein -
  LIT29_RS14425 (LIT29_14450) - 2762400..2762585 (-) 186 WP_048006059.1 YqzE family protein -
  LIT29_RS14430 (LIT29_14455) - 2762631..2763131 (-) 501 WP_048006060.1 shikimate kinase -
  LIT29_RS14435 (LIT29_14460) - 2763135..2763491 (-) 357 WP_148795474.1 hypothetical protein -
  LIT29_RS14440 (LIT29_14465) comGF 2763481..2763924 (-) 444 WP_187427072.1 competence type IV pilus minor pilin ComGF -
  LIT29_RS14445 (LIT29_14470) - 2763890..2764207 (-) 318 WP_063191678.1 hypothetical protein -
  LIT29_RS14450 (LIT29_14475) comGD 2764191..2764622 (-) 432 WP_048006064.1 competence type IV pilus minor pilin ComGD -
  LIT29_RS14455 (LIT29_14480) comGC 2764624..2764944 (-) 321 WP_082139329.1 competence type IV pilus major pilin ComGC -
  LIT29_RS14460 (LIT29_14485) comGB 2764967..2766022 (-) 1056 WP_148795478.1 competence type IV pilus assembly protein ComGB -
  LIT29_RS14465 (LIT29_14490) comGA 2765973..2767016 (-) 1044 WP_048006066.1 competence type IV pilus ATPase ComGA Machinery gene
  LIT29_RS14470 (LIT29_14495) - 2767185..2768120 (-) 936 WP_231578738.1 branched-chain amino acid ABC transporter permease -
  LIT29_RS14475 (LIT29_14500) - 2768177..2769049 (-) 873 WP_048012600.1 branched-chain amino acid ABC transporter permease -
  LIT29_RS14480 (LIT29_14505) - 2769072..2769776 (-) 705 WP_063191681.1 ABC transporter ATP-binding protein -
  LIT29_RS14485 (LIT29_14510) - 2769754..2770527 (-) 774 WP_063191682.1 ABC transporter ATP-binding protein -
  LIT29_RS14490 (LIT29_14515) - 2770589..2771791 (-) 1203 WP_048006071.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39149.61 Da        Isoelectric Point: 9.2220

>NTDB_id=617677 LIT29_RS14465 WP_048006066.1 2765973..2767016(-) (comGA) [Rossellomorea marisflavi strain F17]
MISEAFRSHATDVHLVPRKHDYLIQFRKLGTLVPFKTIDEDQAERLIAHLKFMSSMDIAEKRKPQSGSYTHFISRIPLAL
RVSTLPTTHLKESLVIRILPERYQIPIEHMSLYPSSAKKLVALLMHSHGLILFTGPTGSGKTTTLYSLVHHCAVSLNRNV
ITLEDPVEKAHDEMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAEIAVRAALTGHLVLSSVHTRDAKGAIY
RLMELGIKWHDIEQTILAVSAQRLLRLKCPVCGNDCFGECLAEGKRTNRATVFEILTGKELKNVLMEAKGEKVDHQYLTL
KQLIRKGVALGYVPESEYRKWIHEEKG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=617677 LIT29_RS14465 WP_048006066.1 2765973..2767016(-) (comGA) [Rossellomorea marisflavi strain F17]
ATGATTTCGGAAGCATTTCGCAGTCATGCAACAGATGTCCATCTCGTCCCTCGCAAGCACGATTACCTCATCCAGTTCAG
AAAGCTCGGAACACTCGTCCCGTTCAAGACGATCGACGAAGACCAGGCCGAGCGCCTCATCGCACATCTGAAGTTCATGT
CCTCCATGGATATCGCAGAGAAGCGAAAGCCCCAAAGCGGCTCCTACACCCATTTCATCTCACGGATCCCCCTGGCACTG
CGGGTATCCACCCTTCCGACCACCCATCTCAAAGAAAGCCTCGTCATCCGGATCCTGCCCGAACGCTATCAGATCCCCAT
CGAGCATATGTCCCTCTATCCGTCCTCAGCCAAAAAACTCGTCGCCCTGCTCATGCATTCCCACGGTCTGATCTTGTTTA
CCGGACCGACGGGAAGCGGGAAGACGACCACCCTTTACTCCCTTGTCCACCATTGTGCCGTTTCCCTTAACCGCAACGTC
ATCACCCTGGAAGATCCTGTTGAGAAGGCCCACGATGAGATGGTCCAGATCCAGGTGAATGAAAAGGCAGGTATCACTTA
TTCGACCGGTCTTAAAGCCATTCTCCGCCATGATCCGGATATCATCATGGTCGGGGAGATCCGGGATAAAGAAACCGCTG
AAATTGCCGTCAGGGCAGCCCTCACCGGACATCTCGTCCTCTCATCTGTCCACACGCGGGATGCGAAGGGGGCCATCTAC
CGGCTCATGGAGCTCGGAATCAAATGGCATGATATCGAACAGACCATTTTGGCGGTTTCTGCCCAGAGGCTGCTACGATT
GAAATGCCCGGTCTGCGGGAATGATTGCTTCGGGGAATGCCTCGCTGAAGGGAAGAGGACCAACCGGGCTACGGTTTTCG
AGATCCTGACGGGCAAAGAGCTGAAGAATGTGCTGATGGAAGCAAAAGGGGAAAAGGTCGACCATCAATACCTGACGCTG
AAGCAGCTCATCCGGAAGGGGGTGGCACTCGGATATGTTCCAGAATCTGAGTATCGGAAATGGATACATGAAGAAAAGGG
ATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165JA74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.043

100

0.55