Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT29_RS14230 Genome accession   NZ_CP085398
Coordinates   2723055..2724755 (-) Length   566 a.a.
NCBI ID   WP_252264856.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2718055..2729755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS14210 (LIT29_14230) - 2719535..2719774 (+) 240 WP_048005993.1 DUF2627 domain-containing protein -
  LIT29_RS14215 (LIT29_14235) - 2719783..2720511 (-) 729 WP_048014717.1 glycerophosphodiester phosphodiesterase -
  LIT29_RS14220 (LIT29_14240) spo0A 2720610..2721386 (-) 777 WP_048014027.1 sporulation transcription factor Spo0A -
  LIT29_RS14225 (LIT29_14245) spoIVB 2721651..2722928 (-) 1278 WP_252264855.1 SpoIVB peptidase -
  LIT29_RS14230 (LIT29_14250) recN 2723055..2724755 (-) 1701 WP_252264856.1 DNA repair protein RecN Machinery gene
  LIT29_RS14235 (LIT29_14255) argR 2724875..2725327 (-) 453 WP_286674597.1 transcriptional regulator ArgR -
  LIT29_RS14240 (LIT29_14260) - 2725818..2727413 (+) 1596 WP_048006026.1 APC family permease -
  LIT29_RS14245 (LIT29_14265) - 2727486..2728325 (-) 840 WP_048006027.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63690.33 Da        Isoelectric Point: 4.9900

>NTDB_id=617676 LIT29_RS14230 WP_252264856.1 2723055..2724755(-) (recN) [Rossellomorea marisflavi strain F17]
MLQELSIKNFAIIDSIALSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEFVRHGEKKAEIEGLFLLDDRHHPCYAK
ASEFGIDIEEGMIVLRRDISSTGKSVCRVNGKLVTIATMREIGSTLIDIHGQHEHQELMNEHLHLTLLDQFGGKDIASSL
TAYLDVFDEYQTVSRQLKRLNENEQEMAHRLDLIQFQQKEIQDAELRLHEDDELQEEKLKLVNFEKLYEALQTSYDSLRG
ERKGMDWAGLAMGHLETAAEVDAQFGGTLESVSSAYYILEDAAHAIRAELDQLEFEPGRLDMIESRLNEINGLKRKYGSS
IEEILAYGSRIEEEIETIINKDSHVQQLQDQLQSLENDLSVEAENLTIARKKWAKKLTVSIHEQLKQLYMDKTKFEVKFL
TDGDAVNRKFKKEGWDEVEFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQSIA
EKIYQVAVHSQVMCISHLPQVAAMADCHLFISKKQANGRTSTKVKRLEENEKIQEISRMISGVEITDLTLEHAKELLHLA
GSIKET

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=617676 LIT29_RS14230 WP_252264856.1 2723055..2724755(-) (recN) [Rossellomorea marisflavi strain F17]
TTGTTACAGGAACTTTCAATCAAAAATTTTGCCATCATCGACTCGATCGCCCTTTCATTTGAAGAAGGATTGACGGTCCT
TTCAGGGGAAACAGGTGCGGGGAAGTCCATCATCATCGATGCCATCCATCTATTGGTAGGAGGCAGGGGGTCATCCGAGT
TCGTCCGGCATGGAGAGAAAAAAGCCGAGATTGAAGGGTTATTCCTATTGGACGATCGCCATCATCCTTGCTATGCAAAG
GCTTCTGAATTCGGGATCGACATCGAAGAGGGCATGATTGTTCTCAGGAGAGATATTTCCAGTACGGGTAAAAGTGTGTG
CCGGGTGAACGGAAAGCTTGTGACGATTGCTACCATGCGTGAAATCGGGTCAACGCTCATTGACATCCATGGGCAGCACG
AGCATCAGGAGCTCATGAATGAGCATCTTCATCTGACACTTCTGGATCAGTTTGGTGGAAAGGATATTGCTTCGTCGCTC
ACGGCATATCTGGATGTATTCGATGAGTATCAGACCGTGTCCAGACAGCTTAAGCGGTTGAATGAAAATGAACAGGAGAT
GGCTCATCGCCTTGATCTTATCCAATTCCAGCAAAAAGAGATACAGGATGCGGAGCTCCGCCTGCATGAGGATGATGAAC
TGCAGGAGGAAAAGCTGAAGCTCGTCAATTTCGAGAAGCTATACGAAGCCCTCCAGACGTCATATGACAGCCTGCGCGGG
GAAAGAAAAGGAATGGACTGGGCGGGACTCGCCATGGGTCATCTTGAAACCGCGGCGGAAGTGGACGCGCAGTTTGGCGG
GACGCTTGAGTCAGTATCCTCAGCCTACTACATCCTTGAGGATGCTGCCCATGCCATCAGGGCGGAACTGGATCAGCTCG
AGTTTGAACCGGGAAGGCTTGATATGATCGAATCCAGGCTGAATGAAATCAATGGACTGAAACGGAAGTACGGTTCATCA
ATCGAAGAAATCCTTGCATATGGTTCACGGATCGAAGAGGAGATCGAAACCATCATCAACAAGGATTCGCATGTACAGCA
GCTGCAAGATCAGTTGCAGTCCCTTGAAAATGATCTCTCGGTGGAGGCGGAAAATCTGACGATCGCCCGTAAAAAGTGGG
CCAAGAAACTTACGGTCAGTATCCACGAGCAGTTGAAGCAGCTCTACATGGATAAAACGAAATTCGAGGTCAAGTTCCTT
ACCGACGGGGATGCCGTAAACCGGAAATTCAAGAAGGAGGGGTGGGATGAAGTCGAGTTTTATATCTCCACGAATCCTGG
TGAACCCCTGAAGCCGCTCTCGAAGGTCGCTTCGGGGGGAGAACTTTCCCGCATCATGCTCGCCCTTAAGACGATCTTCT
CCAAGCATCAGGGGATCACTTCCATCATCTTCGACGAAGTGGATACGGGTGTCAGCGGAAGGGTGGCTCAATCGATTGCA
GAGAAGATCTATCAGGTGGCCGTCCATTCACAAGTGATGTGCATATCCCATCTTCCGCAGGTTGCGGCCATGGCAGACTG
TCATCTGTTCATTTCGAAGAAACAAGCGAACGGGCGCACGAGCACGAAGGTAAAAAGACTAGAGGAAAATGAGAAGATCC
AGGAAATCTCCCGCATGATCTCCGGCGTGGAAATCACCGATCTTACCCTTGAACATGCCAAAGAGCTCCTTCATTTGGCA
GGAAGCATCAAAGAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.17

100

0.604