Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIT29_RS08680 Genome accession   NZ_CP085398
Coordinates   1637090..1638049 (+) Length   319 a.a.
NCBI ID   WP_252266522.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632090..1643049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS08655 (LIT29_08670) - 1633087..1633635 (-) 549 WP_048004337.1 winged helix-turn-helix domain-containing protein -
  LIT29_RS08660 (LIT29_08675) - 1633806..1635074 (+) 1269 WP_053072402.1 MFS transporter -
  LIT29_RS08665 (LIT29_08680) - 1635134..1635316 (-) 183 WP_048004335.1 DUF2929 family protein -
  LIT29_RS08670 (LIT29_08685) - 1635542..1636282 (+) 741 WP_048004334.1 hypothetical protein -
  LIT29_RS08675 (LIT29_08690) - 1636301..1637020 (+) 720 WP_048004333.1 hypothetical protein -
  LIT29_RS08680 (LIT29_08695) med 1637090..1638049 (+) 960 WP_252266522.1 BMP family ABC transporter substrate-binding protein Regulator
  LIT29_RS08685 (LIT29_08700) comZ 1638046..1638228 (+) 183 WP_048004331.1 ComZ family protein Regulator
  LIT29_RS08690 (LIT29_08705) - 1638627..1639559 (+) 933 WP_252266384.1 beta-ketoacyl-ACP synthase III -
  LIT29_RS08695 (LIT29_08710) fabF 1639609..1640853 (+) 1245 WP_252266385.1 beta-ketoacyl-ACP synthase II -
  LIT29_RS08700 (LIT29_08715) - 1640948..1641709 (+) 762 WP_048004328.1 DUF2268 domain-containing protein -
  LIT29_RS08705 (LIT29_08720) - 1641815..1642564 (+) 750 WP_252266386.1 YjbA family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34998.00 Da        Isoelectric Point: 4.2884

>NTDB_id=617662 LIT29_RS08680 WP_252266522.1 1637090..1638049(+) (med) [Rossellomorea marisflavi strain F17]
MKFFHLSMILLLIGGCSAGNRSGEMDNAGLLVPETIDDGVWGTKGYQGLLGIQKEFDVKVYYKEGMKNDASVRQAIDDFE
KEDVNLVFGHGSEYSSIFNEVASEHKDMHLVSFNGDATQKNTTSLTFKGYAMGFFGGMTAASQTKTDRLGIIAAFSWQPE
VQGFIDGARYQNSQAEVLVDYTGHWDHAEVALERLDGLLDQDVDVVYPAGDGYNVAVIEKLKESGRYAIGYVSDQSDLGE
STVLTSTVQHADKLYELIAGKYTADELESGNLEFDFQDGVISMGEFSPVIPDGFKSEMNQHIKAYVDTGKLPNGKEPPL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=617662 LIT29_RS08680 WP_252266522.1 1637090..1638049(+) (med) [Rossellomorea marisflavi strain F17]
ATGAAATTTTTTCACTTGTCGATGATCCTGTTGCTCATCGGGGGCTGCTCTGCCGGTAACCGGTCAGGAGAGATGGATAA
TGCCGGTCTGCTTGTACCGGAAACGATTGATGACGGCGTTTGGGGAACCAAGGGCTATCAAGGTCTTTTAGGCATCCAGA
AAGAGTTCGATGTGAAGGTTTATTATAAAGAAGGCATGAAGAACGATGCATCGGTCCGTCAAGCCATAGATGACTTTGAA
AAGGAAGACGTCAATCTTGTTTTCGGACATGGGAGTGAGTATTCTTCCATATTCAATGAGGTGGCATCAGAGCATAAAGA
CATGCATCTGGTGAGCTTCAACGGGGACGCCACGCAGAAAAATACTACCAGCCTGACTTTCAAAGGCTACGCTATGGGCT
TCTTTGGAGGGATGACGGCGGCTTCCCAGACCAAGACGGATCGACTCGGCATCATTGCCGCCTTTTCCTGGCAGCCGGAA
GTACAGGGGTTCATTGATGGAGCCAGATACCAAAACAGTCAAGCAGAGGTTCTGGTCGATTATACAGGTCACTGGGATCA
TGCCGAGGTTGCCCTCGAAAGGCTCGACGGACTCCTCGACCAGGACGTGGACGTTGTATATCCTGCTGGGGACGGGTATA
ATGTGGCTGTAATTGAAAAGCTCAAGGAATCAGGCCGGTATGCGATCGGGTATGTGAGCGACCAATCAGACCTTGGGGAA
TCAACGGTGCTGACGAGTACGGTCCAGCATGCCGACAAATTGTATGAATTGATTGCCGGGAAATATACAGCCGATGAGCT
TGAGTCGGGTAATCTTGAATTCGACTTCCAGGACGGGGTCATCTCCATGGGAGAATTCAGCCCTGTAATCCCTGATGGAT
TCAAGAGCGAAATGAACCAGCATATCAAAGCATATGTCGATACCGGGAAACTACCGAACGGAAAGGAGCCGCCACTATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

51.974

95.298

0.495