Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT29_RS03120 Genome accession   NZ_CP085398
Coordinates   608422..609372 (+) Length   316 a.a.
NCBI ID   WP_048006937.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603422..614372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS03095 (LIT29_03085) - 603505..603690 (-) 186 WP_048006815.1 hypothetical protein -
  LIT29_RS03100 (LIT29_03090) motA 603843..604634 (+) 792 WP_048006816.1 flagellar motor stator protein MotA -
  LIT29_RS03105 (LIT29_03095) motB 604621..605412 (+) 792 WP_048012240.1 flagellar motor protein MotB -
  LIT29_RS03110 (LIT29_03100) - 605593..605769 (+) 177 WP_156183300.1 hypothetical protein -
  LIT29_RS03115 (LIT29_03105) - 605900..607291 (+) 1392 WP_252265719.1 sodium:alanine symporter family protein -
  LIT29_RS03120 (LIT29_03110) ceuB 608422..609372 (+) 951 WP_048006937.1 ABC transporter permease Machinery gene
  LIT29_RS03125 (LIT29_03115) - 609365..610315 (+) 951 WP_252265720.1 iron chelate uptake ABC transporter family permease subunit -
  LIT29_RS03130 (LIT29_03120) - 610312..611073 (+) 762 WP_252265721.1 ATP-binding cassette domain-containing protein -
  LIT29_RS03135 (LIT29_03125) - 611103..612038 (+) 936 WP_252265722.1 siderophore ABC transporter substrate-binding protein -
  LIT29_RS03140 (LIT29_03130) - 612477..613571 (+) 1095 WP_053071998.1 carbohydrate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34598.87 Da        Isoelectric Point: 10.0422

>NTDB_id=617654 LIT29_RS03120 WP_048006937.1 608422..609372(+) (ceuB) [Rossellomorea marisflavi strain F17]
MKKRYLLILLILLSALSLFVGVSSISPADLLSGRTDEVEVFLVSRLPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTMDATRLGILVSMIIFVEASTMEKLLVAFAFAMAGTFLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANLI
QNMSSWLQGDFSLIMKGRYELLYISVPVILLAYLFANRFTVAGMGEEFSKNLGMSYRSIVNIGLILTSLVTVVVILTVGM
IPFLGLIVPNIVSLFKGDHLQKTLPHTAILGAIFLLVCDILGRVIIFPYEISISLMVGVIGSGIFLYMLLRRKGYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=617654 LIT29_RS03120 WP_048006937.1 608422..609372(+) (ceuB) [Rossellomorea marisflavi strain F17]
CTGAAAAAAAGATATTTACTGATTTTACTGATTCTCCTCTCAGCCCTTTCTTTATTTGTCGGAGTGAGCAGCATCTCGCC
GGCAGATTTACTCAGCGGAAGGACCGATGAGGTGGAAGTGTTCCTGGTCAGCAGGCTGCCGAGGCTTGTGGCGATCCTAC
TGGCGGGAGCGGGGATGAGCATTGCCGGTCTCATCATGCAGAGCCTGAGCCGGAATAAGTTTGTATCTCCGACCACGGCG
GGGACAATGGATGCGACAAGGCTCGGGATCCTTGTATCGATGATCATTTTCGTCGAGGCATCCACGATGGAGAAGCTCCT
TGTGGCGTTTGCCTTTGCCATGGCGGGCACATTCCTGTTCATGCAGATCCTTGACCGGATCAAGTTCAAGGATGCTGTCT
TCATTCCCTTGGTGGGGCTGATGCTCGGGAATGTCCTGTCATCGGTCACGACTTTTTTTGCCTACAAGGCGAACCTCATC
CAGAATATGTCTTCATGGCTGCAAGGAGATTTCTCCCTCATTATGAAGGGAAGATACGAGCTTCTATACATAAGTGTACC
GGTCATATTACTGGCCTACCTCTTCGCCAATCGCTTTACGGTTGCGGGAATGGGAGAGGAGTTTTCGAAGAATCTGGGGA
TGTCCTACAGGAGCATCGTGAACATCGGGTTGATCCTTACATCACTCGTGACGGTGGTCGTGATTTTGACGGTGGGGATG
ATTCCATTCCTCGGGCTCATCGTCCCGAATATCGTCTCCCTGTTCAAGGGGGATCACCTCCAAAAAACGCTGCCTCATAC
GGCCATCCTGGGAGCGATTTTTCTTCTCGTCTGCGATATCCTCGGAAGGGTCATTATTTTCCCGTATGAAATCTCCATCA
GTCTGATGGTCGGAGTCATTGGAAGTGGGATCTTCCTCTACATGCTTTTAAGGAGGAAGGGATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513