Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GDK21_RS03390 Genome accession   NZ_AP019542
Coordinates   709268..709942 (+) Length   224 a.a.
NCBI ID   WP_001166500.1    Uniprot ID   Q99VW2
Organism   Staphylococcus aureus strain KG-03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 704268..714942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK21_RS03365 (SAKG03_06280) - 704483..705550 (+) 1068 WP_000980137.1 membrane protein -
  GDK21_RS03370 (SAKG03_06290) - 705701..706744 (+) 1044 WP_001030772.1 alpha/beta hydrolase -
  GDK21_RS03375 (SAKG03_06300) - 707073..707501 (+) 429 WP_000198504.1 hypothetical protein -
  GDK21_RS03380 (SAKG03_06310) - 707710..708216 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  GDK21_RS03385 (SAKG03_06320) graX 708329..709252 (+) 924 WP_000802955.1 auxiliary protein GraX/ApsX -
  GDK21_RS03390 (SAKG03_06330) braR 709268..709942 (+) 675 WP_001166500.1 response regulator transcription factor GraR/ApsR Regulator
  GDK21_RS03395 (SAKG03_06340) graS 709935..710975 (+) 1041 WP_001061264.1 histidine kinase GraS/ApsS -
  GDK21_RS03400 (SAKG03_06350) vraF 711119..711880 (+) 762 WP_000985996.1 ABC transporter ATP-binding protein VraF -
  GDK21_RS03405 (SAKG03_06360) - 711870..712211 (+) 342 Protein_649 ABC transporter permease -
  GDK21_RS03410 (SAKG03_06370) - 712258..713430 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26065.87 Da        Isoelectric Point: 4.3563

>NTDB_id=61763 GDK21_RS03390 WP_001166500.1 709268..709942(+) (braR) [Staphylococcus aureus strain KG-03]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=61763 GDK21_RS03390 WP_001166500.1 709268..709942(+) (braR) [Staphylococcus aureus strain KG-03]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAACCTTTCTATACCAATGTATT
AATTGCTAAATTACAAGCGATTTATCGTCGTGTCTATGAGTTTACAGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGACGATACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACCAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGT
TAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAA
CAAAAGTAGGAAAAGGATATATGGCTCATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-221)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99VW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.455

98.214

0.397

Multiple sequence alignment