Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT26_RS27490 Genome accession   NZ_CP085395
Coordinates   5640228..5641178 (-) Length   316 a.a.
NCBI ID   WP_252268000.1    Uniprot ID   A0AA90NY27
Organism   Peribacillus frigoritolerans strain CK6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5635228..5646178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT26_RS27475 (LIT26_27495) - 5637379..5638326 (-) 948 WP_063596106.1 siderophore ABC transporter substrate-binding protein -
  LIT26_RS27480 (LIT26_27500) - 5638536..5639294 (-) 759 WP_063233995.1 ABC transporter ATP-binding protein -
  LIT26_RS27485 (LIT26_27505) - 5639288..5640235 (-) 948 WP_252267999.1 iron chelate uptake ABC transporter family permease subunit -
  LIT26_RS27490 (LIT26_27510) ceuB 5640228..5641178 (-) 951 WP_252268000.1 ABC transporter permease Machinery gene
  LIT26_RS27495 (LIT26_27515) - 5641423..5641785 (+) 363 WP_252268001.1 DUF1450 domain-containing protein -
  LIT26_RS27500 (LIT26_27520) - 5642004..5643653 (+) 1650 WP_252268002.1 M14 family metallopeptidase -
  LIT26_RS27505 (LIT26_27525) shc 5643822..5645717 (+) 1896 WP_252268003.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34908.23 Da        Isoelectric Point: 9.5025

>NTDB_id=617579 LIT26_RS27490 WP_252268000.1 5640228..5641178(-) (ceuB) [Peribacillus frigoritolerans strain CK6]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=617579 LIT26_RS27490 WP_252268000.1 5640228..5641178(-) (ceuB) [Peribacillus frigoritolerans strain CK6]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGGATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGAATGGTGACCATAGTCA
TTGCCGGAATTGTGATGAGTATAAGCGGCCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCGCCGACGACAGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATCCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCGATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATCTAAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGAGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGCTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCAAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50

100

0.5