Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NUT86_RS29200 Genome accession   NZ_CP102609
Coordinates   6832473..6833702 (+) Length   409 a.a.
NCBI ID   WP_018087159.1    Uniprot ID   -
Organism   Streptomyces sp. G7(2002)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6827473..6838702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUT86_RS29185 (NUT86_29245) - 6828312..6829295 (-) 984 WP_274738367.1 LLM class flavin-dependent oxidoreductase -
  NUT86_RS29190 (NUT86_29250) - 6829393..6830877 (-) 1485 WP_274738369.1 cytosine permease -
  NUT86_RS29195 (NUT86_29255) - 6831104..6832327 (-) 1224 WP_274738371.1 FAD-dependent oxidoreductase -
  NUT86_RS29200 (NUT86_29260) pilA 6832473..6833702 (+) 1230 WP_018087159.1 signal recognition particle-docking protein FtsY Machinery gene
  NUT86_RS29205 (NUT86_29265) - 6833882..6834550 (-) 669 WP_018087158.1 bifunctional DNA primase/polymerase -
  NUT86_RS29210 (NUT86_29270) - 6835110..6836510 (+) 1401 WP_229838022.1 hypothetical protein -
  NUT86_RS29215 (NUT86_29275) - 6836884..6838224 (+) 1341 WP_018087156.1 ammonium transporter -
  NUT86_RS29220 (NUT86_29280) - 6838221..6838559 (+) 339 WP_018087155.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 42658.79 Da        Isoelectric Point: 4.5652

>NTDB_id=617563 NUT86_RS29200 WP_018087159.1 6832473..6833702(+) (pilA) [Streptomyces sp. G7(2002)]
MDIVILAVVIAVVVLGAISGLVVSGRKKKQLPPSPPAAPKPSVTAPPAEPHVGEEAETPRDEERRTIEEVTLPTAEAPVA
EAPAAEPEAPAAPAIEVPEPTAGRLVRLRARLSRSQNTLGKGLLTLLSREHLDEETWEEIEDTLLTADVGVAPTQELVDR
LRERVKVLGTRTPEGLRELLREELLALIGTDADRTVHTANGIGNGGDEIPGVVMVVGVNGTGKTTTTGKLARVLVADGKS
VVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEAADVVLIDTAGRLHTKTGLMDELGKVKRV
VEKHGPVGEVLLVLDATTGQNGLVQARVFAEVVDITGVVLTKLDGTAKGGIIVAVQRELGVPVKLIGLGEGADDLAPFEP
QAFVDALID

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=617563 NUT86_RS29200 WP_018087159.1 6832473..6833702(+) (pilA) [Streptomyces sp. G7(2002)]
ATGGACATCGTCATCCTTGCTGTAGTCATCGCCGTGGTCGTGCTCGGCGCGATCAGCGGGCTCGTCGTCAGCGGCCGCAA
GAAGAAGCAGCTGCCGCCGTCCCCGCCGGCTGCCCCGAAGCCCTCCGTTACCGCGCCCCCCGCCGAACCGCATGTCGGCG
AGGAGGCCGAGACCCCCCGCGACGAAGAGCGTCGCACCATCGAAGAAGTCACGCTGCCCACCGCCGAGGCCCCCGTGGCC
GAAGCGCCGGCCGCCGAGCCCGAGGCGCCCGCCGCCCCCGCGATCGAGGTCCCCGAGCCCACCGCGGGCCGGCTGGTCCG
GCTGCGCGCCCGGCTCTCCCGCTCCCAGAACACCCTGGGCAAGGGCCTGCTGACCCTGCTCTCCCGTGAACACCTCGACG
AGGAGACCTGGGAGGAGATCGAGGACACCCTGCTGACCGCCGACGTCGGCGTCGCCCCCACCCAGGAGCTGGTCGACCGG
CTGCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGAAGGCCTGCGCGAACTGCTGCGTGAGGAGCTCCTCGCCCT
CATCGGCACGGACGCCGACCGCACCGTGCACACCGCCAACGGCATCGGCAACGGCGGCGACGAGATCCCCGGCGTCGTCA
TGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTCCTGGTCGCCGACGGCAAGTCC
GTGGTCCTCGGCGCCGCCGACACCTTCCGCGCCGCGGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGGGTCGGTGCCCG
TACGGTCCGCGGACCCGAGGGCGGCGACCCCGCCTCCATCGCCTTCGACGCGGTGAAGGAAGGCATCGCCGAGGCCGCCG
ATGTCGTCCTGATCGACACCGCGGGCCGGCTGCACACCAAGACCGGTCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTC
GTCGAGAAGCACGGCCCGGTCGGCGAGGTGCTGCTCGTCCTGGACGCCACCACCGGCCAGAACGGCCTGGTCCAGGCCCG
GGTGTTCGCCGAGGTCGTGGACATCACCGGGGTCGTGCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCATCGTCG
CCGTCCAGCGCGAACTCGGCGTTCCCGTCAAGCTCATCGGCCTGGGCGAGGGGGCGGACGACCTGGCGCCCTTCGAGCCG
CAGGCCTTTGTCGACGCCCTGATCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(211-408)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.551

88.264

0.367