Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT26_RS18580 Genome accession   NZ_CP085395
Coordinates   3865070..3866785 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain CK6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3860070..3871785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT26_RS18555 (LIT26_18570) - 3860209..3860445 (+) 237 WP_034308264.1 DUF2627 domain-containing protein -
  LIT26_RS18560 (LIT26_18575) - 3860484..3861218 (-) 735 WP_063594089.1 glycerophosphodiester phosphodiesterase -
  LIT26_RS18565 (LIT26_18580) - 3861237..3861437 (-) 201 WP_063594090.1 hypothetical protein -
  LIT26_RS30765 - 3862128..3862256 (+) 129 WP_286675978.1 hypothetical protein -
  LIT26_RS18570 (LIT26_18585) spo0A 3862495..3863286 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  LIT26_RS18575 (LIT26_18590) spoIVB 3863616..3864908 (-) 1293 WP_063590652.1 SpoIVB peptidase -
  LIT26_RS18580 (LIT26_18595) recN 3865070..3866785 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  LIT26_RS18585 (LIT26_18600) argR 3866808..3867257 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  LIT26_RS18590 (LIT26_18605) - 3867578..3868405 (-) 828 WP_063594092.1 TlyA family RNA methyltransferase -
  LIT26_RS18595 (LIT26_18610) dxs 3868410..3870302 (-) 1893 WP_063595029.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT26_RS18600 (LIT26_18615) - 3870552..3871445 (-) 894 WP_063594093.1 polyprenyl synthetase family protein -
  LIT26_RS18605 (LIT26_18620) - 3871447..3871680 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=617561 LIT26_RS18580 WP_048681817.1 3865070..3866785(-) (recN) [Peribacillus frigoritolerans strain CK6]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=617561 LIT26_RS18580 WP_048681817.1 3865070..3866785(-) (recN) [Peribacillus frigoritolerans strain CK6]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGTGGCCGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGACTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAGAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTAACGATTTCCACATTACGTGAGATAGGGCGGACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTTGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCATCGCCTTGATCTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGC
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTATTTCCTCCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACCGAACGTGTGGAATTCATTGAAAGTAGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTAGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTAATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTA
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGAATTAATCAGTCTGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTTTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTAAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAGATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613