Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIT38_RS20795 Genome accession   NZ_CP085394
Coordinates   4123888..4124640 (-) Length   250 a.a.
NCBI ID   WP_243504922.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4118888..4129640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS20780 (LIT38_20810) - 4119655..4120287 (-) 633 WP_162272013.1 helix-turn-helix transcriptional regulator -
  LIT38_RS20785 (LIT38_20815) glyS 4120546..4122618 (-) 2073 WP_252215791.1 glycine--tRNA ligase subunit beta -
  LIT38_RS20790 (LIT38_20820) glyQ 4122611..4123501 (-) 891 WP_113882800.1 glycine--tRNA ligase subunit alpha -
  LIT38_RS20795 (LIT38_20825) recO 4123888..4124640 (-) 753 WP_243504922.1 DNA repair protein RecO Machinery gene
  LIT38_RS20800 (LIT38_20830) - 4124671..4124814 (-) 144 WP_009332996.1 YqzL family protein -
  LIT38_RS20805 (LIT38_20835) era 4124975..4125895 (-) 921 WP_243504923.1 GTPase Era -
  LIT38_RS20810 (LIT38_20840) - 4125888..4126286 (-) 399 WP_206838792.1 cytidine deaminase -
  LIT38_RS20815 (LIT38_20845) - 4126240..4126617 (-) 378 WP_252215794.1 hypothetical protein -
  LIT38_RS20820 (LIT38_20850) - 4126713..4127105 (-) 393 WP_243504925.1 diacylglycerol kinase family protein -
  LIT38_RS20825 (LIT38_20855) ybeY 4127083..4127553 (-) 471 WP_243504926.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28495.04 Da        Isoelectric Point: 8.7588

>NTDB_id=617521 LIT38_RS20795 WP_243504922.1 4123888..4124640(-) (recO) [Bacillus sp. CMF12]
MLDKCEGIVIRTTNYSETNKIVTLYTREWGKVGVMARGAKKPNSRLAAVTQLFTYGNFLVQRGSGLGTLQQGDMISSMRS
IKEDIFLTAYASYIVDLTDKSIEDKKPNPFLFELLYQTLNLINEGYDPEILTNIYEMKMLNALGLYPVLDQCSVCGSTDG
HFAFSIRENGLICHRCLGKDPYHYKVSQATIKLLRLFYFFDLSRLGNISVKPETKAELKKIISAYYEEYSGLNLKTKKFL
NQMAKFNDLM

Nucleotide


Download         Length: 753 bp        

>NTDB_id=617521 LIT38_RS20795 WP_243504922.1 4123888..4124640(-) (recO) [Bacillus sp. CMF12]
TTGCTTGATAAATGTGAAGGCATCGTCATCAGGACAACTAACTATAGTGAAACAAATAAGATTGTTACTTTATATACCCG
TGAATGGGGAAAAGTTGGTGTGATGGCACGAGGTGCGAAAAAGCCGAACAGCAGACTTGCTGCTGTCACCCAGCTTTTTA
CATACGGGAATTTTTTAGTTCAGCGTGGAAGCGGTTTGGGTACCCTGCAGCAGGGGGACATGATTTCATCCATGCGGTCC
ATTAAAGAAGATATTTTTCTGACGGCATATGCAAGCTATATTGTCGATTTGACTGATAAAAGCATCGAGGATAAGAAGCC
TAATCCATTCTTATTCGAATTGCTGTATCAAACGCTAAATTTAATAAACGAAGGATATGACCCGGAAATTCTCACAAACA
TTTATGAAATGAAAATGCTGAATGCTCTGGGTTTATATCCAGTACTTGATCAATGTTCTGTCTGCGGAAGCACTGACGGA
CATTTTGCATTTTCTATCCGGGAAAACGGCCTGATTTGTCACCGCTGTCTTGGTAAGGATCCTTATCATTATAAAGTGTC
GCAGGCGACAATTAAGCTGCTTCGCCTATTTTACTTTTTTGACTTGTCCCGGCTCGGCAATATCTCTGTCAAACCGGAAA
CCAAAGCTGAATTGAAGAAGATTATTTCTGCCTATTATGAAGAGTATTCAGGCTTAAACTTGAAGACAAAGAAGTTTTTG
AATCAAATGGCTAAGTTTAATGATTTAATGTAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(4-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

64.4

100

0.644