Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SAIN_RS02330 Genome accession   NC_022244
Coordinates   467194..467904 (-) Length   236 a.a.
NCBI ID   WP_021001389.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 462194..472904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS02315 (SAIN_0451) - 462587..463711 (+) 1125 WP_003028351.1 AI-2E family transporter -
  SAIN_RS02320 (SAIN_0452) - 463935..465584 (+) 1650 WP_021001387.1 phosphoenolpyruvate carboxykinase (ATP) -
  SAIN_RS02325 (SAIN_0453) - 465701..467041 (+) 1341 WP_021001388.1 hemolysin family protein -
  SAIN_RS02330 (SAIN_0454) treR 467194..467904 (-) 711 WP_021001389.1 trehalose operon repressor Regulator
  SAIN_RS02335 (SAIN_0455) treP 468083..469574 (+) 1492 Protein_425 PTS system trehalose-specific EIIBC component -
  SAIN_RS10130 - 469641..470096 (+) 456 Protein_426 PTS glucose transporter subunit IIA -
  SAIN_RS10080 (SAIN_0456) treC 470303..471933 (+) 1631 Protein_427 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27675.76 Da        Isoelectric Point: 9.8121

>NTDB_id=61752 SAIN_RS02330 WP_021001389.1 467194..467904(-) (treR) [Streptococcus anginosus C1051]
MKKYKQIFKLLEQDILNEKYQINDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKRRGKGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSINREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=61752 SAIN_RS02330 WP_021001389.1 467194..467904(-) (treR) [Streptococcus anginosus C1051]
ATGAAAAAATATAAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATAAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAAGGAGAGGTAAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAACCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACTAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCAAAAGTCTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTCTCCAAACGGCAAAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.983

100

0.64

Multiple sequence alignment