Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIT38_RS19095 Genome accession   NZ_CP085394
Coordinates   3814021..3814632 (+) Length   203 a.a.
NCBI ID   WP_243504560.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3809021..3819632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS19065 (LIT38_19095) - 3809311..3810174 (-) 864 WP_243504552.1 ABC transporter permease subunit -
  LIT38_RS19070 (LIT38_19100) - 3810414..3811109 (-) 696 WP_252215539.1 YppG family protein -
  LIT38_RS19075 (LIT38_19105) - 3811305..3811520 (+) 216 WP_009332703.1 YppF family protein -
  LIT38_RS19080 (LIT38_19110) - 3811546..3811923 (-) 378 WP_243504556.1 YppE family protein -
  LIT38_RS19085 (LIT38_19115) - 3811996..3812259 (-) 264 WP_243504557.1 hypothetical protein -
  LIT38_RS19090 (LIT38_19120) - 3812831..3813823 (-) 993 WP_243504559.1 DUF2515 domain-containing protein -
  LIT38_RS19095 (LIT38_19125) recU 3814021..3814632 (+) 612 WP_243504560.1 Holliday junction resolvase RecU Machinery gene
  LIT38_RS19100 (LIT38_19130) - 3814675..3817359 (+) 2685 WP_243504562.1 penicillin-binding protein 1A -
  LIT38_RS19105 (LIT38_19135) - 3817459..3817983 (-) 525 WP_243504564.1 YpoC family protein -
  LIT38_RS19110 (LIT38_19140) nth 3817980..3818636 (-) 657 WP_243504566.1 endonuclease III -
  LIT38_RS19115 (LIT38_19145) - 3818688..3819398 (-) 711 WP_243504567.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23775.06 Da        Isoelectric Point: 9.0198

>NTDB_id=617517 LIT38_RS19095 WP_243504560.1 3814021..3814632(+) (recU) [Bacillus sp. CMF12]
MNFHYPNGRRYTPSANSANKLTPEKKWTYSNRGMTLEEDINETNEFYLEHGIATIHKKPTPVQIVQVDYPKRSAAVIKEA
YFKQASTTDYNGVYKGRYIDFEAKETQNTTSFPLKNFHEHQVKHMEKVLAQQGICFVLLRFSATEEVFLLEAHHLLSYWE
RMKDGGRKSITKGEIEMHGHHIPLGFQPRIDYIKIIDYLYTLK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=617517 LIT38_RS19095 WP_243504560.1 3814021..3814632(+) (recU) [Bacillus sp. CMF12]
ATGAATTTCCATTATCCTAATGGCAGGAGATATACTCCATCTGCTAATAGCGCCAATAAATTAACACCAGAGAAGAAATG
GACGTACAGCAATCGTGGAATGACACTGGAGGAAGATATAAATGAAACCAATGAATTCTATCTGGAACATGGAATAGCCA
CTATTCATAAAAAGCCTACTCCTGTTCAAATCGTCCAGGTCGATTATCCAAAGAGAAGTGCGGCCGTTATTAAAGAAGCA
TATTTCAAACAAGCTTCAACAACCGATTATAATGGTGTGTATAAAGGGAGATATATTGATTTTGAAGCAAAAGAAACTCA
GAACACGACCTCCTTTCCTTTAAAGAATTTTCATGAACACCAGGTGAAGCACATGGAGAAGGTATTAGCCCAGCAAGGGA
TTTGTTTTGTTCTTCTCCGCTTCTCTGCTACCGAAGAAGTTTTCCTTTTAGAGGCACATCATTTGCTCTCATACTGGGAG
AGAATGAAGGATGGGGGAAGAAAATCAATTACCAAGGGTGAAATCGAAATGCATGGCCATCACATTCCGCTTGGATTTCA
GCCCAGAATTGACTATATTAAGATAATAGATTATCTTTATACCCTTAAATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.245

96.552

0.601