Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LIT38_RS17370 Genome accession   NZ_CP085394
Coordinates   3477101..3477781 (-) Length   226 a.a.
NCBI ID   WP_243504034.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3472101..3482781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS17350 (LIT38_17375) - 3472169..3473281 (+) 1113 WP_243504027.1 aromatic acid exporter family protein -
  LIT38_RS17355 (LIT38_17380) - 3473321..3474382 (-) 1062 WP_243504030.1 SDR family NAD(P)-dependent oxidoreductase -
  LIT38_RS17360 (LIT38_17385) - 3474528..3475295 (-) 768 WP_243504032.1 hypothetical protein -
  LIT38_RS17365 (LIT38_17390) - 3475434..3476948 (-) 1515 WP_243504033.1 helix-turn-helix domain-containing protein -
  LIT38_RS17370 (LIT38_17395) degU 3477101..3477781 (-) 681 WP_243504034.1 response regulator transcription factor Regulator
  LIT38_RS17375 (LIT38_17400) - 3477981..3480035 (+) 2055 WP_243504035.1 molybdopterin oxidoreductase family protein -
  LIT38_RS17380 (LIT38_17405) - 3480066..3480599 (-) 534 WP_243504036.1 topology modulation protein -
  LIT38_RS17385 (LIT38_17410) - 3480723..3481742 (+) 1020 WP_243504037.1 DUF3231 family protein -
  LIT38_RS17390 (LIT38_17415) - 3481773..3482276 (-) 504 WP_243504038.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25318.25 Da        Isoelectric Point: 9.1576

>NTDB_id=617516 LIT38_RS17370 WP_243504034.1 3477101..3477781(-) (degU) [Bacillus sp. CMF12]
MALKIAIVDDHKLFREGVKRILEMEEDLEVVAEGEDGRDALIIDKNYKPDVMIMDIDMPNMNGIKATDKLNENKSKSKVI
ILSFYDDENYVTRVLQNGAAGYLLKDIGAKGLIEAIRIVASGGSYLDPKVTQNIIKEYKRLTELNSGSNHASSQNYQRPL
HILTRRECEVLQLLADGNSNTGISKALFISDKTVKNHVSSILRKIKVHDRTQAVLLAIKKGWVRIG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=617516 LIT38_RS17370 WP_243504034.1 3477101..3477781(-) (degU) [Bacillus sp. CMF12]
ATGGCGCTAAAAATTGCGATTGTAGATGATCATAAGCTCTTCAGAGAAGGGGTCAAACGGATACTGGAAATGGAAGAGGA
CCTTGAAGTAGTTGCTGAAGGGGAAGATGGTCGTGATGCTCTCATAATTGATAAGAATTATAAGCCTGACGTTATGATTA
TGGATATCGATATGCCTAATATGAATGGCATCAAAGCAACGGATAAGCTGAATGAAAACAAATCAAAAAGCAAAGTCATT
ATTTTATCTTTTTATGATGATGAGAATTATGTCACGAGGGTGCTCCAGAATGGTGCAGCCGGATACCTGCTTAAAGATAT
TGGTGCAAAAGGGCTAATCGAAGCGATCAGGATTGTTGCCAGTGGAGGCAGTTATCTGGATCCCAAGGTTACGCAAAATA
TTATAAAGGAATACAAAAGGCTTACAGAATTAAATTCAGGCAGCAATCATGCGTCAAGTCAGAATTATCAGCGTCCACTG
CATATATTGACTCGCCGCGAATGCGAGGTGCTTCAGCTGCTGGCAGATGGGAATAGCAATACTGGCATCAGTAAAGCGCT
TTTTATTAGCGATAAAACGGTTAAAAATCATGTAAGCAGCATTTTGAGAAAGATAAAAGTTCATGATCGGACACAGGCAG
TCCTTCTCGCCATCAAAAAGGGCTGGGTCAGAATCGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(162-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

60.889

99.558

0.606