Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LIT38_RS08395 Genome accession   NZ_CP085394
Coordinates   1623541..1624008 (-) Length   155 a.a.
NCBI ID   WP_243508247.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618541..1629008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS08370 (LIT38_08385) - 1618998..1619201 (-) 204 WP_009331014.1 hypothetical protein -
  LIT38_RS08375 (LIT38_08390) - 1619480..1620010 (+) 531 WP_243508243.1 RDD family protein -
  LIT38_RS08380 (LIT38_08395) - 1620126..1620590 (+) 465 WP_243508244.1 DinB family protein -
  LIT38_RS08385 (LIT38_08400) - 1621003..1622322 (+) 1320 WP_252217579.1 MFS transporter -
  LIT38_RS08390 (LIT38_08405) - 1622589..1623494 (+) 906 WP_243508246.1 chemotaxis protein -
  LIT38_RS08395 (LIT38_08410) kre 1623541..1624008 (-) 468 WP_243508247.1 YkyB family protein Regulator
  LIT38_RS08400 (LIT38_08415) - 1624105..1625385 (-) 1281 WP_243508248.1 MFS transporter -
  LIT38_RS08405 (LIT38_08420) - 1625382..1625990 (-) 609 WP_243508249.1 PadR family transcriptional regulator -
  LIT38_RS08410 (LIT38_08425) - 1626126..1626623 (-) 498 WP_243509329.1 L,D-transpeptidase family protein -
  LIT38_RS08415 (LIT38_08430) - 1626749..1627624 (-) 876 WP_243508250.1 metallophosphoesterase -
  LIT38_RS08420 (LIT38_08435) fadH 1627875..1628639 (+) 765 WP_243508251.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17670.26 Da        Isoelectric Point: 10.3846

>NTDB_id=617509 LIT38_RS08395 WP_243508247.1 1623541..1624008(-) (kre) [Bacillus sp. CMF12]
MNSDKKQYPHLQPTVENLSQAIFTVNRHAKTAPNPKFLYKLKHDALQKLIKEGKAQKTGLHYSGNPKNSQQQSDVLVKCG
NYSFHLPPSKEDFSELPHLGKLDSFVRNPKSSLSLNAAKKLLMSYTGLKELNSTPNEKKHRYEKPVFKKLGESYF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=617509 LIT38_RS08395 WP_243508247.1 1623541..1624008(-) (kre) [Bacillus sp. CMF12]
TTGAATTCTGATAAGAAACAATATCCCCATCTGCAACCAACGGTTGAAAACCTCTCTCAAGCCATCTTCACCGTTAACCG
CCATGCAAAGACAGCACCAAATCCTAAATTTTTGTATAAATTAAAGCACGATGCACTTCAAAAGTTAATAAAAGAAGGAA
AAGCCCAAAAAACAGGCCTTCACTATTCTGGCAATCCAAAAAACAGCCAGCAGCAGTCAGATGTTCTGGTAAAGTGCGGG
AATTATTCTTTCCACCTTCCGCCCTCTAAAGAGGATTTTTCAGAGCTTCCCCATTTGGGCAAACTCGATTCCTTCGTCAG
AAATCCAAAATCTTCACTATCTCTTAATGCTGCGAAAAAATTGCTTATGTCATATACAGGGCTAAAAGAGCTTAATAGCA
CGCCAAACGAAAAAAAGCACCGCTATGAAAAACCTGTATTTAAGAAATTAGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(15-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

66.207

93.548

0.619