Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIT38_RS07395 Genome accession   NZ_CP085394
Coordinates   1419969..1420931 (+) Length   320 a.a.
NCBI ID   WP_252217464.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414969..1425931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS07375 (LIT38_07390) clpB 1415126..1417723 (+) 2598 WP_243508082.1 ATP-dependent chaperone ClpB -
  LIT38_RS07380 (LIT38_07395) - 1417794..1417985 (-) 192 WP_206835273.1 YjzD family protein -
  LIT38_RS07385 (LIT38_07400) - 1418200..1418937 (+) 738 WP_243508083.1 hydrolase -
  LIT38_RS07390 (LIT38_07405) - 1419020..1419850 (+) 831 WP_243508084.1 hypothetical protein -
  LIT38_RS07395 (LIT38_07410) med 1419969..1420931 (+) 963 WP_252217464.1 BMP family ABC transporter substrate-binding protein Regulator
  LIT38_RS07400 (LIT38_07415) comZ 1420954..1421148 (+) 195 WP_243508086.1 ComZ family protein Regulator
  LIT38_RS07405 (LIT38_07420) - 1421823..1422785 (+) 963 WP_252217469.1 nuclease-related domain-containing protein -
  LIT38_RS07410 (LIT38_07425) - 1422795..1423181 (-) 387 WP_252217471.1 hypothetical protein -
  LIT38_RS07415 (LIT38_07430) - 1423395..1424327 (+) 933 WP_252217473.1 beta-ketoacyl-ACP synthase III -
  LIT38_RS07420 (LIT38_07435) fabF 1424376..1425614 (+) 1239 WP_206835286.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35687.35 Da        Isoelectric Point: 4.4822

>NTDB_id=617502 LIT38_RS07395 WP_252217464.1 1419969..1420931(+) (med) [Bacillus sp. CMF12]
MHKTLVKFGILLLCLLLLASCGQAMSTGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYNVEVYYKEGMNSEMVVERA
VKELDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNDNTTSLNFEAYAMGFFGGMVAGHMTKTNNIGILAAF
EWQPEVEGFYQGVSQIDERINVQIQYVGNWDNDNKAISLLEKMIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTVQHVDVLYELVAEKFNEGELESGNLTFDFEDEVISLGKFSPDVDEEFKKELNAAIENYKKTGKLPTKN

Nucleotide


Download         Length: 963 bp        

>NTDB_id=617502 LIT38_RS07395 WP_252217464.1 1419969..1420931(+) (med) [Bacillus sp. CMF12]
ATGCATAAGACATTAGTGAAATTCGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCGGACAAGCGATGTCTAC
AGGAAAACTTGAAAAAGCTGGATTATTAGTGCCCGATACCGTCAATGATCAGGTATGGGGGACCAAAGGCTATAAAGGCA
TGTTAAAGATTCAATCCCATTATAATGTTGAGGTTTATTATAAAGAGGGCATGAATTCTGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTAGATCAAAAAGGTGTAAACCTGATTTTTGGACATGGCAATGAATACGCGGCATACTTTAATAACATTTC
TAAAAAATACCCTGACATTCATTTTGTCAGCTTTAATGGCGATGCCCAAAATGACAACACCACCAGCTTGAATTTTGAAG
CCTATGCAATGGGATTCTTTGGCGGCATGGTTGCTGGTCATATGACGAAAACCAATAATATAGGAATACTCGCAGCTTTT
GAATGGCAGCCGGAGGTAGAAGGTTTTTATCAAGGTGTAAGCCAAATTGATGAAAGAATAAATGTGCAAATTCAATATGT
CGGCAACTGGGACAATGATAATAAAGCCATATCTCTCTTGGAAAAAATGATTGCCAATAAGACAGATGTTGTCTATCCAG
CTGGAGATGGGTATAATGTTCCTGTCATCGAGAAACTAAAAGAAGAAGGGCTCTACGCCATCGGTTATATTTCCGACCAG
TCTGATCTGGGTGAATCAGTTGTGCTGACCAGTACTGTTCAGCATGTCGATGTTTTGTATGAACTAGTTGCAGAAAAATT
CAACGAAGGCGAACTGGAGTCAGGAAATTTAACTTTCGATTTCGAGGATGAAGTTATTTCACTGGGAAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCCGCCATTGAGAATTACAAAAAAACAGGCAAACTGCCCACCAAGAAT
TGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.035

97.813

0.519