Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIT38_RS05390 Genome accession   NZ_CP085394
Coordinates   1023657..1023980 (-) Length   107 a.a.
NCBI ID   WP_221880714.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018657..1028980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS05350 (LIT38_05360) - 1018904..1019245 (-) 342 WP_243507538.1 helix-turn-helix domain-containing protein -
  LIT38_RS05355 (LIT38_05365) tapA 1019519..1020346 (+) 828 WP_286675746.1 amyloid fiber anchoring/assembly protein TapA -
  LIT38_RS05360 (LIT38_05370) sipW 1020361..1020939 (+) 579 WP_243507542.1 signal peptidase I SipW -
  LIT38_RS05365 (LIT38_05375) - 1021025..1021618 (+) 594 WP_243507544.1 CalY family protein -
  LIT38_RS05370 (LIT38_05380) - 1021689..1022402 (+) 714 WP_252217276.1 LPXTG cell wall anchor domain-containing protein -
  LIT38_RS05375 (LIT38_05385) - 1022513..1022719 (+) 207 WP_243507548.1 DUF5658 family protein -
  LIT38_RS05380 (LIT38_05390) - 1022859..1023125 (+) 267 WP_243507550.1 hypothetical protein -
  LIT38_RS05385 (LIT38_05395) - 1023412..1023558 (+) 147 WP_095244404.1 anti-repressor SinI family protein -
  LIT38_RS05390 (LIT38_05400) sinR 1023657..1023980 (-) 324 WP_221880714.1 helix-turn-helix domain-containing protein Regulator
  LIT38_RS05395 (LIT38_05405) mnmH 1024159..1025220 (-) 1062 WP_252217278.1 tRNA 2-selenouridine(34) synthase MnmH -
  LIT38_RS05400 (LIT38_05410) - 1025446..1026747 (+) 1302 WP_243507554.1 NAD(P)/FAD-dependent oxidoreductase -
  LIT38_RS05405 (LIT38_05415) - 1026744..1027733 (+) 990 WP_252217280.1 class I SAM-dependent methyltransferase -
  LIT38_RS05410 (LIT38_05420) treR 1027794..1028522 (+) 729 WP_252217282.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12336.10 Da        Isoelectric Point: 7.2052

>NTDB_id=617494 LIT38_RS05390 WP_221880714.1 1023657..1023980(-) (sinR) [Bacillus sp. CMF12]
MIGDRVKKLRQEKKMSLSELADQAGVAKSYLSSLERNLQTNPSIQFLEKIAGVLNVPVDHLIHEQINKDDLDSEWMKIVK
EAMESGVSKEQFREFLDFNKWRSGQKS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617494 LIT38_RS05390 WP_221880714.1 1023657..1023980(-) (sinR) [Bacillus sp. CMF12]
ATGATCGGTGATCGTGTAAAAAAACTTCGCCAAGAAAAGAAAATGTCCTTATCCGAGCTTGCCGACCAGGCCGGTGTGGC
AAAATCATATTTAAGCTCACTTGAACGCAACCTGCAAACCAACCCATCTATTCAATTTCTTGAGAAAATCGCGGGTGTTC
TGAATGTCCCCGTAGACCATTTAATCCATGAGCAAATCAACAAGGATGATCTAGATTCAGAATGGATGAAAATTGTGAAG
GAAGCGATGGAGTCTGGTGTTTCAAAGGAGCAATTTCGGGAGTTTTTGGATTTTAATAAGTGGAGAAGCGGACAAAAGTC
ATAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.055

100

0.673