Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT38_RS01060 Genome accession   NZ_CP085394
Coordinates   188078..189031 (+) Length   317 a.a.
NCBI ID   WP_221881271.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183078..194031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS01045 (LIT38_01050) glmM 183378..184727 (+) 1350 WP_243506513.1 phosphoglucosamine mutase -
  LIT38_RS26415 - 185025..185150 (+) 126 WP_275724031.1 hypothetical protein -
  LIT38_RS01050 (LIT38_01055) glmS 185247..187049 (+) 1803 WP_243506514.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LIT38_RS01055 (LIT38_01060) - 187352..187741 (+) 390 WP_243506515.1 ribbon-helix-helix protein, CopG family -
  LIT38_RS01060 (LIT38_01065) ceuB 188078..189031 (+) 954 WP_221881271.1 ABC transporter permease Machinery gene
  LIT38_RS01065 (LIT38_01070) - 189021..189974 (+) 954 WP_243506516.1 iron chelate uptake ABC transporter family permease subunit -
  LIT38_RS01070 (LIT38_01075) - 189971..190738 (+) 768 WP_252216728.1 ABC transporter ATP-binding protein -
  LIT38_RS01075 (LIT38_01080) - 190948..191973 (+) 1026 WP_252216732.1 siderophore ABC transporter substrate-binding protein -
  LIT38_RS01080 (LIT38_01085) - 192254..192892 (+) 639 WP_252216734.1 O-methyltransferase -
  LIT38_RS01085 (LIT38_01090) - 192956..193792 (-) 837 WP_252216737.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34723.77 Da        Isoelectric Point: 9.3878

>NTDB_id=617490 LIT38_RS01060 WP_221881271.1 188078..189031(+) (ceuB) [Bacillus sp. CMF12]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLVGIMYGNILSSITTFFGYEADLL
QNISSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLILVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=617490 LIT38_RS01060 WP_221881271.1 188078..189031(+) (ceuB) [Bacillus sp. CMF12]
ATGAGATTATGGATGTTAGGAATTGCAGCCATCGTTCTGTCTTTTATCTCGCTATTTATCGGAGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATTTTCCTTATTAGCCGCATCCCACGGTTATTGGCGATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGAAATAAGTTTGTATCACCAACTACTGCT
GGAACATTGGATGCAGCAAAGCTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTAACCTATACACAGCAAGTTAT
TTTTAGTTTTGCCTTTGCTTTAGCAGGCACATTTCTCTTTATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TTGTTCCATTAGTTGGAATTATGTATGGGAATATTTTATCTTCCATTACAACGTTCTTTGGATATGAAGCAGATCTTCTG
CAAAATATATCTTCTTGGCTTATGGGAAGTTTCACTTTGATTATTGCTGGCCGTTATGAGCTTTTATATGTTAGTATTCC
AGCTATTATTTTAGCGTATCTTTATGCGAATAAATTTACAGTTGCAGGAATGGGTGAAGATTTTGCGAGAAATCTAGGTT
TAAGTTATAAGCTGGTACTAAATATAGGTCTGATACTTGTTGCGGTTATATCGACAACGGTTGTCCTAACTGTCGGGGTT
ATTCCATTTTTAGGACTGATTGTGCCGAATATTGTCTCTCTTTATTTAGGTGATAACCTGCGCAAAACGATTCCGCATAC
AGCGGTGTTAGGAATTGTTTTCCTATTAATATGCGACATTCTAGGGCGAATCATCATTCATCCTTATGAAATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCAATCTTCTTAACGATGTTGCTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.814

94.953

0.53