Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT38_RS00240 Genome accession   NZ_CP085394
Coordinates   45906..46190 (-) Length   94 a.a.
NCBI ID   WP_009336674.1    Uniprot ID   A0A169FC36
Organism   Bacillus sp. CMF12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40906..51190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS00205 (LIT38_00205) - 41252..41692 (+) 441 WP_221878788.1 YaaR family protein -
  LIT38_RS00210 (LIT38_00210) holB 41706..42713 (+) 1008 WP_243506442.1 DNA polymerase III subunit delta' -
  LIT38_RS00215 (LIT38_00215) - 42706..43533 (+) 828 WP_009336679.1 stage 0 sporulation family protein -
  LIT38_RS00220 (LIT38_00220) yabA 43546..43920 (+) 375 WP_061794161.1 DNA replication initiation control protein YabA -
  LIT38_RS00225 (LIT38_00225) - 43996..44736 (+) 741 WP_243506443.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIT38_RS00230 (LIT38_00230) - 44726..45010 (+) 285 WP_243506444.1 GIY-YIG nuclease family protein -
  LIT38_RS00235 (LIT38_00235) rsmI 44988..45866 (+) 879 WP_243506446.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIT38_RS00240 (LIT38_00240) abrB 45906..46190 (-) 285 WP_009336674.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT38_RS00245 (LIT38_00245) metG 47032..48996 (+) 1965 WP_243506447.1 methionine--tRNA ligase -
  LIT38_RS00250 (LIT38_00250) - 49214..49981 (+) 768 WP_243506448.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10586.31 Da        Isoelectric Point: 5.2185

>NTDB_id=617487 LIT38_RS00240 WP_009336674.1 45906..46190(-) (abrB) [Bacillus sp. CMF12]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDENISLANGKLILSRDGAE
QLLKEIQNTFELAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=617487 LIT38_RS00240 WP_009336674.1 45906..46190(-) (abrB) [Bacillus sp. CMF12]
ATGAAATCCACAGGTATTGTTCGTAAAGTTGATGAGCTTGGCCGCGTAGTTATCCCTATTGAATTAAGACGTACACTTGG
AATTGCTGAAAAGGACGCTTTAGAAATCTACGTAGATGACGAAAGAATCATCCTTAAAAAGTACAAGCCAAACATGACTT
GCCAAGTTACTGGGGAAGTATCTGATGAAAATATCTCTTTAGCTAACGGCAAATTAATTCTAAGCCGTGACGGTGCAGAA
CAGCTGTTAAAAGAAATTCAAAACACTTTTGAATTAGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A169FC36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.615

96.809

0.819