Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LIT38_RS00020 Genome accession   NZ_CP085394
Coordinates   3320..4438 (+) Length   372 a.a.
NCBI ID   WP_243506419.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS00005 (LIT38_00005) dnaA 1..1347 (+) 1347 WP_243506414.1 chromosomal replication initiator protein DnaA -
  LIT38_RS00010 (LIT38_00010) dnaN 1524..2660 (+) 1137 WP_252216682.1 DNA polymerase III subunit beta -
  LIT38_RS00015 (LIT38_00015) yaaA 2913..3134 (+) 222 WP_243506417.1 S4 domain-containing protein YaaA -
  LIT38_RS00020 (LIT38_00020) recF 3320..4438 (+) 1119 WP_243506419.1 DNA replication/repair protein RecF Machinery gene
  LIT38_RS00025 (LIT38_00025) remB 4448..4696 (+) 249 WP_206841044.1 extracellular matrix regulator RemB -
  LIT38_RS00030 (LIT38_00030) gyrB 4834..6756 (+) 1923 WP_243506421.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43110.47 Da        Isoelectric Point: 7.6836

>NTDB_id=617485 LIT38_RS00020 WP_243506419.1 3320..4438(+) (recF) [Bacillus sp. CMF12]
MHIEQLLLKNYRNYEELEVNFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLIRWDQEYAKIEGRVQKRQGS
LPMQLVISKKGKKAKCNHIEQQKLSQYVGNMNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDISQYQKILQQR
NHYLKMLQIKKQTDHTMLEILTEQFIEMAAKIVSKRYEFLRLLENWAQPIHEGISRGLETLKIEYKPSAEVSEEQDLSKM
VKVYQDKFEKVKNREIDRGVTMFGPHRDDLIFHVNGRDVQTFGSQGQQRTTALSVKLAEIELIHSEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLKEAAAFSVEAGRIKKIQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=617485 LIT38_RS00020 WP_243506419.1 3320..4438(+) (recF) [Bacillus sp. CMF12]
ATGCATATAGAGCAGTTGCTATTAAAAAATTACCGGAATTACGAAGAGCTTGAAGTAAATTTCGAAAATAAAGTAAATGT
GATTTTGGGAGAGAATGCCCAGGGAAAGACAAATGTCATGGAATCGATCTACGTGCTGGCAATGGCAAAGTCCCATCGGA
CATCAAATGACAAAGATCTTATTCGCTGGGATCAGGAATATGCTAAAATAGAAGGAAGGGTCCAAAAAAGGCAAGGATCC
CTGCCCATGCAATTAGTCATCAGCAAAAAAGGCAAAAAAGCCAAATGCAATCATATAGAGCAGCAGAAATTAAGCCAGTA
TGTGGGCAATATGAATGTTGTGATGTTCGCGCCTGAAGATCTCCATCTTGTGAAAGGGAGCCCTCAAGTAAGGCGTCGTT
TTATTGATATGGAGATTGGGCAGGTTTCACCTGTCTATTTGCATGATATCAGCCAGTATCAGAAAATCCTCCAGCAGCGC
AACCACTACCTGAAAATGCTCCAGATCAAAAAGCAGACCGACCATACCATGCTTGAGATTTTAACAGAGCAATTCATTGA
GATGGCTGCAAAGATTGTTTCAAAGCGTTACGAGTTCCTCAGACTCCTCGAGAATTGGGCACAGCCGATTCATGAAGGGA
TTTCAAGAGGGCTTGAGACCTTAAAAATTGAGTACAAGCCTTCTGCCGAGGTATCAGAAGAACAAGATTTGTCGAAAATG
GTTAAAGTATACCAGGATAAATTTGAAAAAGTGAAGAACAGGGAAATAGACCGTGGCGTTACCATGTTTGGGCCGCATCG
CGATGACCTGATTTTTCATGTGAATGGGCGCGATGTGCAAACATTCGGTTCACAAGGGCAGCAAAGAACGACAGCTCTGT
CGGTTAAGCTTGCCGAAATCGAACTGATCCATTCTGAAATTGGAGAATATCCCATTCTGCTGCTGGATGACGTCCTCTCG
GAATTGGATGATTATCGCCAATCCCATTTATTGAATACCATTCAAGGGAAAGTACAGACGTTTGTCACTACTACGAGCGT
TGATGGAATAGACCACCAGACACTTAAAGAAGCAGCAGCGTTCAGTGTTGAGGCAGGGAGAATCAAGAAGATTCAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

72.973

99.462

0.726