Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NUW85_RS13695 Genome accession   NZ_CP102603
Coordinates   2821227..2822357 (+) Length   376 a.a.
NCBI ID   WP_003151195.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816227..2827357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS13670 (NUW85_13675) - 2817183..2817869 (+) 687 WP_003151188.1 VWA domain-containing protein -
  NUW85_RS13675 (NUW85_13680) - 2818179..2818859 (+) 681 WP_015387578.1 VWA domain-containing protein -
  NUW85_RS13680 (NUW85_13685) - 2818946..2819110 (+) 165 WP_003151191.1 hypothetical protein -
  NUW85_RS13685 (NUW85_13690) fdhD 2819205..2819993 (+) 789 WP_014306001.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NUW85_RS13690 (NUW85_13695) moaA 2820011..2821036 (+) 1026 WP_015387579.1 GTP 3',8-cyclase MoaA -
  NUW85_RS13695 (NUW85_13700) rapC 2821227..2822357 (+) 1131 WP_003151195.1 tetratricopeptide repeat protein Regulator
  NUW85_RS13700 (NUW85_13705) - 2822480..2822959 (+) 480 WP_003151196.1 hypothetical protein -
  NUW85_RS13705 (NUW85_13710) - 2823033..2823221 (+) 189 WP_003151197.1 CsbD family protein -
  NUW85_RS13710 (NUW85_13715) ureA 2823574..2823891 (+) 318 WP_003151198.1 urease subunit gamma -
  NUW85_RS13715 (NUW85_13720) ureB 2823888..2824262 (+) 375 WP_003151199.1 urease subunit beta -
  NUW85_RS13720 (NUW85_13725) ureC 2824259..2825968 (+) 1710 WP_024085908.1 urease subunit alpha -
  NUW85_RS13725 (NUW85_13730) - 2826109..2826513 (+) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  NUW85_RS13730 (NUW85_13735) - 2826551..2826862 (+) 312 WP_025853587.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44932.05 Da        Isoelectric Point: 5.3221

>NTDB_id=617463 NUW85_RS13695 WP_003151195.1 2821227..2822357(+) (rapC) [Bacillus amyloliquefaciens strain MBLB0692]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=617463 NUW85_RS13695 WP_003151195.1 2821227..2822357(+) (rapC) [Bacillus amyloliquefaciens strain MBLB0692]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCATATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACAATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTTCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATTTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTCACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399