Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   NUW85_RS11270 Genome accession   NZ_CP102603
Coordinates   2357151..2357381 (-) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2352151..2362381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS11260 (NUW85_11265) spoVT 2352875..2353411 (-) 537 WP_004264646.1 stage V sporulation protein T -
  NUW85_RS11265 (NUW85_11270) mfd 2353548..2357081 (-) 3534 WP_014304197.1 transcription-repair coupling factor -
  NUW85_RS11270 (NUW85_11275) subA/fin 2357151..2357381 (-) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  NUW85_RS11275 (NUW85_11280) pth 2357443..2358009 (-) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  NUW85_RS11280 (NUW85_11285) - 2358094..2358702 (-) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  NUW85_RS11285 (NUW85_11290) - 2358787..2359740 (-) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  NUW85_RS11290 (NUW85_11295) glmU 2359762..2361132 (-) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  NUW85_RS11295 (NUW85_11300) spoVG 2361324..2361617 (-) 294 WP_004264660.1 septation regulator SpoVG -
  NUW85_RS11300 (NUW85_11305) ridA 2361813..2362193 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=617448 NUW85_RS11270 WP_004264650.1 2357151..2357381(-) (subA/fin) [Bacillus amyloliquefaciens strain MBLB0692]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=617448 NUW85_RS11270 WP_004264650.1 2357151..2357381(-) (subA/fin) [Bacillus amyloliquefaciens strain MBLB0692]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868