Detailed information NTG0617442

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NUW85_RS10110
• Genome accession: NZ_CP102603
• Coordinates: 2146782..2147903 (-)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBLB0692
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2141782..2152903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUW85_RS10090 (NUW85_10095)	-	2142225..2142920 (-)	696	WP_025853797.1	metal ABC transporter ATP-binding protein	-
NUW85_RS10095 (NUW85_10100)	-	2142975..2143934 (-)	960	WP_003156656.1	metal ABC transporter substrate-binding protein	-
NUW85_RS10100 (NUW85_10105)	-	2144125..2145804 (-)	1680	WP_069448528.1	alpha-glucosidase	-
NUW85_RS10105 (NUW85_10110)	-	2145887..2146666 (-)	780	WP_139885561.1	glucose 1-dehydrogenase	-
NUW85_RS10110 (NUW85_10115)	rapF	2146782..2147903 (-)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
NUW85_RS10115 (NUW85_10120)	-	2148013..2148516 (+)	504	WP_015388738.1	M15 family metallopeptidase	-
NUW85_RS10120 (NUW85_10125)	-	2148513..2149871 (-)	1359	WP_014304284.1	YcdB/YcdC domain-containing protein	-
NUW85_RS10125 (NUW85_10130)	-	2150072..2151472 (-)	1401	WP_015388739.1	YcdB/YcdC domain-containing protein	-
NUW85_RS10130 (NUW85_10135)	-	2151601..2152596 (+)	996	WP_014304282.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=617442 NUW85_RS10110 WP_003156660.1 2146782..2147903(-) (rapF) [Bacillus amyloliquefaciens strain MBLB0692]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=617442 NUW85_RS10110 WP_003156660.1 2146782..2147903(-) (rapF) [Bacillus amyloliquefaciens strain MBLB0692]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402