Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT27_RS01055 Genome accession   NZ_CP085392
Coordinates   189623..190576 (+) Length   317 a.a.
NCBI ID   WP_009336388.1    Uniprot ID   A0A160M628
Organism   Cytobacillus oceanisediminis strain CK22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184623..195576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS01040 (LIT27_01045) glmM 184947..186296 (+) 1350 WP_009336396.1 phosphoglucosamine mutase -
  LIT27_RS30070 - 186576..186701 (+) 126 WP_019381148.1 hypothetical protein -
  LIT27_RS01045 (LIT27_01050) glmS 186797..188599 (+) 1803 WP_009336393.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LIT27_RS01050 (LIT27_01055) - 188892..189281 (+) 390 WP_009336391.1 ribbon-helix-helix protein, CopG family -
  LIT27_RS01055 (LIT27_01060) ceuB 189623..190576 (+) 954 WP_009336388.1 ABC transporter permease Machinery gene
  LIT27_RS01060 (LIT27_01065) - 190566..191519 (+) 954 WP_009336386.1 iron chelate uptake ABC transporter family permease subunit -
  LIT27_RS01065 (LIT27_01070) - 191516..192283 (+) 768 WP_009336384.1 ABC transporter ATP-binding protein -
  LIT27_RS01070 (LIT27_01075) - 192492..193517 (+) 1026 WP_026041659.1 siderophore ABC transporter substrate-binding protein -
  LIT27_RS01075 (LIT27_01080) - 193656..193979 (+) 324 Protein_175 hypothetical protein -
  LIT27_RS01080 (LIT27_01085) - 193998..194636 (+) 639 WP_019381205.1 O-methyltransferase -
  LIT27_RS01085 (LIT27_01090) - 194722..195558 (-) 837 WP_009336376.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34723.77 Da        Isoelectric Point: 9.3878

>NTDB_id=617437 LIT27_RS01055 WP_009336388.1 189623..190576(+) (ceuB) [Cytobacillus oceanisediminis strain CK22]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFGYEADLL
QNISSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=617437 LIT27_RS01055 WP_009336388.1 189623..190576(+) (ceuB) [Cytobacillus oceanisediminis strain CK22]
ATGAGATTATGGATGTTAGGAATTGCAGCCATCGTTCTGTCTTTTATCTCGCTATTTATCGGAGCAATAGATATAACGCC
AAAGGATCTGCTCAATTGGGAATCAGATGAAACACATATTTTCCTTATCAGCCGCATCCCACGGTTATTAGCGATAATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGAAATAAGTTTGTATCACCAACAACTGCT
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTAACCTATACACAGCAAGTTAT
TTTTAGTTTTGCCTTTGCTTTAGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATCT
TTGTTCCGTTAATTGGAATTATGTATGGAAATATACTATCTTCTATTACAACGTTCTTTGGATATGAAGCGGATCTGCTG
CAAAATATATCTTCCTGGCTTATGGGAAGTTTCACTTTGATTATTGCTGGCCGTTATGAGCTTTTATATGTTAGTATTCC
AGCTATTATTCTAGCGTATCTTTATGCGAATAAATTTACAGTTGCCGGAATGGGTGAAGATTTTGCGAGAAATCTTGGTT
TAAGCTATAAGCTAGTACTAAATATTGGTCTGGTCCTTGTTGCGGTTATATCGACAACGGTTGTCCTTACTGTCGGGGTA
ATTCCATTTCTAGGACTCATAGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGTTAGGGATTGTCTTCTTATTAATATGTGACATTCTAGGGCGCATCATCATTCATCCTTATGAAATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCAATCTTCTTAACGATGCTGCTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160M628

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.146

94.953

0.533