Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NUW85_RS07785 Genome accession   NZ_CP102603
Coordinates   1665885..1666601 (-) Length   238 a.a.
NCBI ID   WP_139885639.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660885..1671601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS07770 (NUW85_07770) - 1663153..1664292 (+) 1140 WP_139885640.1 YibE/F family protein -
  NUW85_RS07775 (NUW85_07775) - 1664289..1665050 (+) 762 WP_024085008.1 YibE/F family protein -
  NUW85_RS07780 (NUW85_07780) - 1665086..1665751 (-) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  NUW85_RS07785 (NUW85_07785) treR 1665885..1666601 (-) 717 WP_139885639.1 trehalose operon repressor Regulator
  NUW85_RS07790 (NUW85_07790) treC 1666625..1668310 (-) 1686 WP_139885638.1 alpha,alpha-phosphotrehalase -
  NUW85_RS07795 (NUW85_07795) treP 1668386..1669801 (-) 1416 WP_003155593.1 PTS system trehalose-specific EIIBC component -
  NUW85_RS07800 (NUW85_07800) - 1670073..1670333 (+) 261 WP_007408496.1 spore germination protein -
  NUW85_RS07805 (NUW85_07805) - 1670348..1670590 (+) 243 WP_003155595.1 spore germination protein -
  NUW85_RS07810 (NUW85_07810) - 1670606..1671037 (+) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  NUW85_RS07815 (NUW85_07815) - 1671047..1671424 (-) 378 WP_003155597.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27572.56 Da        Isoelectric Point: 6.6549

>NTDB_id=617426 NUW85_RS07785 WP_139885639.1 1665885..1666601(-) (treR) [Bacillus amyloliquefaciens strain MBLB0692]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELSLSISYAQKEIVVEPAGEEDWKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=617426 NUW85_RS07785 WP_139885639.1 1665885..1666601(-) (treR) [Bacillus amyloliquefaciens strain MBLB0692]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCGGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCAGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACTGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424