Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIS77_RS07300 Genome accession   NZ_CP085390
Coordinates   1373229..1375046 (+) Length   605 a.a.
NCBI ID   WP_048010949.1    Uniprot ID   A0AA46SL18
Organism   Cytobacillus firmus strain CK19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368229..1380046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS07275 (LIS77_07280) - 1368579..1368767 (-) 189 WP_076256698.1 hypothetical protein -
  LIS77_RS07280 (LIS77_07285) - 1369012..1369587 (+) 576 WP_076256700.1 GNAT family N-acetyltransferase -
  LIS77_RS07285 (LIS77_07290) spxA 1370059..1370454 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  LIS77_RS07290 (LIS77_07295) mecA 1370805..1371470 (+) 666 WP_048010951.1 adaptor protein MecA -
  LIS77_RS07295 (LIS77_07300) - 1371915..1373105 (+) 1191 WP_252221327.1 competence protein CoiA family protein -
  LIS77_RS07300 (LIS77_07305) pepF 1373229..1375046 (+) 1818 WP_048010949.1 oligoendopeptidase F Regulator
  LIS77_RS07305 (LIS77_07310) - 1375564..1376433 (-) 870 WP_048010986.1 ClpXP adapter SpxH family protein -
  LIS77_RS07310 (LIS77_07315) - 1376436..1376840 (-) 405 WP_222497363.1 globin -
  LIS77_RS07315 (LIS77_07320) - 1377088..1377729 (-) 642 WP_197214652.1 lytic transglycosylase domain-containing protein -
  LIS77_RS07320 (LIS77_07325) - 1377762..1378352 (-) 591 WP_248346698.1 CYTH domain-containing protein -
  LIS77_RS07325 (LIS77_07330) - 1378550..1378927 (+) 378 WP_048010944.1 hypothetical protein -
  LIS77_RS07330 (LIS77_07335) - 1379047..1379685 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69929.42 Da        Isoelectric Point: 4.9923

>NTDB_id=617400 LIS77_RS07300 WP_048010949.1 1373229..1375046(+) (pepF) [Cytobacillus firmus strain CK19]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGYLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLKEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=617400 LIS77_RS07300 WP_048010949.1 1373229..1375046(+) (pepF) [Cytobacillus firmus strain CK19]
ATGGCTAATGAAACGACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGAGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAATTTGTA
TTCGGAAGCTGCTAGTGCACTTGCTTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTATTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGAATGCTGAATAATGCGGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ACGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGTAATACATTTGCCAGCACT
CTAAGCGGAAACGTAAAAAAAGATAACTTCAACGCTAAGATCCGGAATTATGACTCCGCGCGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAACCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTAAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAAGCAAAAGATCTGATTTTAAAAGGATTAAAGCCGCTTGGTGAAGACTATTTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTGGATGTTCATGAGAATAAGGGCAAAAGGAGCGGTGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGATAATGTGAACAACTTATTTACTCTTGCTCATGAATTTGGCCATTCG
GTACACAGCTATTACACAAGAAAATATCAGCCATACCCTTATGGAAACTACTCAATTTTTGTTGCAGAGGTTGCCTCGAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTTAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCACAA
AACAATGAAGCTTTGACTGCTGATTCATTGACTAAAGAATATTATGAACTTAATAAAAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGACTACCCAATTGAAGTACTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAAAGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486