Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NUW85_RS03535 Genome accession   NZ_CP102603
Coordinates   820259..820621 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 815259..825621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS03510 (NUW85_03510) flhB 816784..817863 (-) 1080 WP_052585931.1 flagellar biosynthesis protein FlhB -
  NUW85_RS03515 (NUW85_03515) fliR 817863..818642 (-) 780 WP_003154233.1 flagellar biosynthetic protein FliR -
  NUW85_RS03520 (NUW85_03520) fliQ 818649..818918 (-) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  NUW85_RS03525 (NUW85_03525) fliP 818933..819598 (-) 666 WP_048367253.1 flagellar type III secretion system pore protein FliP -
  NUW85_RS03530 (NUW85_03530) fliZ 819591..820244 (-) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  NUW85_RS03535 (NUW85_03535) pilH 820259..820621 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  NUW85_RS03540 (NUW85_03540) fliY 820648..821784 (-) 1137 WP_003154239.1 flagellar motor switch phosphatase FliY -
  NUW85_RS03545 (NUW85_03545) fliM 821774..822772 (-) 999 WP_003154240.1 flagellar motor switch protein FliM -
  NUW85_RS03550 (NUW85_03550) fliL 822806..823225 (-) 420 WP_003154241.1 flagellar basal body-associated protein FliL -
  NUW85_RS03555 (NUW85_03555) - 823222..823437 (-) 216 WP_003154243.1 flagellar FlbD family protein -
  NUW85_RS03560 (NUW85_03560) flgG 823477..824253 (-) 777 WP_003154244.1 flagellar basal body rod protein FlgG -
  NUW85_RS03565 (NUW85_03565) flgD 824278..824718 (-) 441 WP_003154247.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=617386 NUW85_RS03535 WP_003154238.1 820259..820621(-) (pilH) [Bacillus amyloliquefaciens strain MBLB0692]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=617386 NUW85_RS03535 WP_003154238.1 820259..820621(-) (pilH) [Bacillus amyloliquefaciens strain MBLB0692]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTAGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTCTAAAGGAAATTAAACAGATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAGGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383