Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIS77_RS01075 Genome accession   NZ_CP085390
Coordinates   190531..191484 (+) Length   317 a.a.
NCBI ID   WP_252220570.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185531..196484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS26465 - 186798..186923 (+) 126 WP_258752018.1 hypothetical protein -
  LIS77_RS01060 (LIS77_01060) glmS 187018..188820 (+) 1803 WP_197205666.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LIS77_RS01065 (LIS77_01065) - 189030..189473 (+) 444 WP_252220566.1 DUF4275 family protein -
  LIS77_RS01070 (LIS77_01070) - 189617..190006 (+) 390 WP_252220568.1 hypothetical protein -
  LIS77_RS01075 (LIS77_01075) ceuB 190531..191484 (+) 954 WP_252220570.1 ABC transporter permease Machinery gene
  LIS77_RS01080 (LIS77_01080) - 191474..192427 (+) 954 WP_248346549.1 iron chelate uptake ABC transporter family permease subunit -
  LIS77_RS01085 (LIS77_01085) - 192424..193191 (+) 768 WP_252220572.1 ABC transporter ATP-binding protein -
  LIS77_RS01090 (LIS77_01090) - 193387..194412 (+) 1026 WP_252220574.1 siderophore ABC transporter substrate-binding protein -
  LIS77_RS01095 (LIS77_01095) - 194794..195432 (+) 639 WP_222501792.1 O-methyltransferase -
  LIS77_RS01100 (LIS77_01100) - 195486..196322 (-) 837 WP_048008714.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34708.80 Da        Isoelectric Point: 9.5815

>NTDB_id=617383 LIS77_RS01075 WP_252220570.1 190531..191484(+) (ceuB) [Cytobacillus firmus strain CK19]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIRPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=617383 LIS77_RS01075 WP_252220570.1 190531..191484(+) (ceuB) [Cytobacillus firmus strain CK19]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCGTTTATCTCGCTGTTTATCGGAGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATAT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATCATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACATTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACGTTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCCATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTTTATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACGGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCGTCCTTATGAAATTCCGGTTA
ATGTAACCGTCGCAGTGATAGGCAGTGCTATCTTCTTAACAATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527