Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NUW85_RS02200 Genome accession   NZ_CP102603
Coordinates   427069..428847 (+) Length   592 a.a.
NCBI ID   WP_003153793.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 422069..433847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS02145 (NUW85_02145) - 422376..422579 (+) 204 WP_025852320.1 DUF6501 family protein -
  NUW85_RS02150 (NUW85_02150) - 422645..422785 (+) 141 WP_003153781.1 DUF4025 domain-containing protein -
  NUW85_RS02155 (NUW85_02155) - 423078..423422 (+) 345 WP_003153783.1 PH domain-containing protein -
  NUW85_RS02160 (NUW85_02160) - 423467..423700 (-) 234 WP_003153785.1 hypothetical protein -
  NUW85_RS02165 (NUW85_02165) - 423697..423969 (-) 273 WP_003153786.1 hypothetical protein -
  NUW85_RS02170 (NUW85_02170) - 424040..424522 (+) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  NUW85_RS02175 (NUW85_02175) - 424509..424742 (-) 234 WP_014305194.1 hypothetical protein -
  NUW85_RS02180 (NUW85_02180) gerPC 424835..425215 (+) 381 WP_014305193.1 spore germination protein GerPC -
  NUW85_RS02185 (NUW85_02185) - 425299..425790 (+) 492 WP_015388121.1 TraR/DksA C4-type zinc finger protein -
  NUW85_RS02190 (NUW85_02190) - 425935..426561 (+) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  NUW85_RS02200 (NUW85_02200) recQ 427069..428847 (+) 1779 WP_003153793.1 DNA helicase RecQ Machinery gene
  NUW85_RS02205 (NUW85_02205) - 429083..429955 (+) 873 WP_003153795.1 3D domain-containing protein -
  NUW85_RS02210 (NUW85_02210) - 430114..430506 (+) 393 WP_031306618.1 hypothetical protein -
  NUW85_RS02215 (NUW85_02215) - 430538..431515 (-) 978 WP_003153798.1 S66 peptidase family protein -
  NUW85_RS02220 (NUW85_02220) - 431580..432077 (-) 498 WP_003153799.1 N-acetyltransferase -
  NUW85_RS02225 (NUW85_02225) - 432272..433054 (+) 783 WP_003153800.1 VLRF1 family aeRF1-type release factor -
  NUW85_RS02230 (NUW85_02230) - 433199..433735 (+) 537 WP_003153801.1 DUF420 domain-containing protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66943.49 Da        Isoelectric Point: 6.4509

>NTDB_id=617375 NUW85_RS02200 WP_003153793.1 427069..428847(+) (recQ) [Bacillus amyloliquefaciens strain MBLB0692]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=617375 NUW85_RS02200 WP_003153793.1 427069..428847(+) (recQ) [Bacillus amyloliquefaciens strain MBLB0692]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGAACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCAGAATTCATCCATATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCCTTAACGGCGACGGCTACGCCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGACCGGTTTATCGAGCGGTACCTCGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGAGAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCGGATTGGCGGATGA
CGACAGAAAAGACCAGCAGGAGCGGTTTCTTAATGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTTGTTTTACACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAAGAAGCCGGACGG
GCCGGGCGCGATGGTCTTAACAGCGAGTGTGTGCTCTTATTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAGCTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGAAGCGTGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCTTGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTTCTTATTTCAGATGAATATATCAGAATGGCG
GACGGCACATTTCCCACGCTTATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGA
AGCCTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGACCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.264

100

0.823