Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIS79_RS10465 Genome accession   NZ_CP085389
Coordinates   2041864..2042499 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain CMF5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036864..2047499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS10425 (LIS79_10430) - 2037026..2038144 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  LIS79_RS10430 (LIS79_10435) - 2038196..2038702 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  LIS79_RS10435 (LIS79_10440) - 2038871..2039290 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  LIS79_RS10440 (LIS79_10445) - 2039312..2039764 (-) 453 WP_017359729.1 YppG family protein -
  LIS79_RS10445 (LIS79_10450) - 2039873..2040244 (-) 372 WP_017359730.1 YppE family protein -
  LIS79_RS10450 (LIS79_10455) - 2040303..2040536 (-) 234 WP_231131595.1 DUF5446 family protein -
  LIS79_RS10455 (LIS79_10460) sspM 2040733..2040837 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  LIS79_RS10460 (LIS79_10465) - 2040861..2041817 (-) 957 WP_252224414.1 DUF2515 domain-containing protein -
  LIS79_RS10465 (LIS79_10470) recU 2041864..2042499 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  LIS79_RS10470 (LIS79_10475) - 2042519..2045209 (+) 2691 WP_252224417.1 PBP1A family penicillin-binding protein -
  LIS79_RS10475 (LIS79_10480) - 2045245..2045754 (-) 510 WP_019744018.1 YpoC family protein -
  LIS79_RS10480 (LIS79_10485) nth 2045751..2046413 (-) 663 WP_008344602.1 endonuclease III -
  LIS79_RS10485 (LIS79_10490) - 2046431..2047135 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=617348 LIS79_RS10465 WP_017359733.1 2041864..2042499(+) (recU) [Bacillus altitudinis strain CMF5]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=617348 LIS79_RS10465 WP_017359733.1 2041864..2042499(+) (recU) [Bacillus altitudinis strain CMF5]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697