Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIS79_RS05680 Genome accession   NZ_CP085389
Coordinates   1127786..1128751 (+) Length   321 a.a.
NCBI ID   WP_008348509.1    Uniprot ID   A0A9X0FWP2
Organism   Bacillus altitudinis strain CMF5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122786..1133751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS05650 (LIS79_05650) argF 1123109..1124059 (+) 951 WP_060832236.1 ornithine carbamoyltransferase -
  LIS79_RS05655 (LIS79_05655) - 1124163..1124342 (+) 180 WP_008348517.1 YjzC family protein -
  LIS79_RS05660 (LIS79_05660) - 1124512..1125777 (+) 1266 WP_060832237.1 MFS transporter -
  LIS79_RS05665 (LIS79_05665) - 1125897..1126091 (-) 195 WP_008348514.1 YjzD family protein -
  LIS79_RS05670 (LIS79_05670) - 1126304..1127044 (+) 741 WP_007499048.1 hypothetical protein -
  LIS79_RS05675 (LIS79_05675) - 1127120..1127695 (+) 576 WP_060832238.1 hypothetical protein -
  LIS79_RS05680 (LIS79_05680) med 1127786..1128751 (+) 966 WP_008348509.1 BMP family ABC transporter substrate-binding protein Regulator
  LIS79_RS05685 (LIS79_05685) comZ 1128763..1128960 (+) 198 WP_008348507.1 ComZ family protein Regulator
  LIS79_RS05690 (LIS79_05690) - 1129164..1129397 (-) 234 WP_060832239.1 hypothetical protein -
  LIS79_RS05695 (LIS79_05695) - 1129567..1130505 (+) 939 WP_024720058.1 beta-ketoacyl-ACP synthase III -
  LIS79_RS05700 (LIS79_05700) fabF 1130527..1131768 (+) 1242 WP_008348501.1 beta-ketoacyl-ACP synthase II -
  LIS79_RS05705 (LIS79_05705) - 1131846..1132640 (+) 795 WP_017360172.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35902.89 Da        Isoelectric Point: 5.9297

>NTDB_id=617332 LIS79_RS05680 WP_008348509.1 1127786..1128751(+) (med) [Bacillus altitudinis strain CMF5]
MKYQRLVMIFSFLLLMLSACSQAPLKGHIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAI
EEFHKKGVNLIIGHGNEYSEIFNLISEDYPKTQFITVNGGKPQADNVTNVTFKGEAMGFFGGMTAAHMSKTKKIGILATY
DWQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVNLYQKLKKQGVDVVYPAGDGYNIPVIEQIKNDNLSAIGYVTDQ
SNLGSHTVLTSTVQHVDKAYSIIAKKFNEGKLNEQGEYSFDFKEGVIEMGKFSSTIDRAFVKDIEKDIANYKKTGKLPNE
K

Nucleotide


Download         Length: 966 bp        

>NTDB_id=617332 LIS79_RS05680 WP_008348509.1 1127786..1128751(+) (med) [Bacillus altitudinis strain CMF5]
ATGAAGTACCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTTCTTATGCTATCTGCCTGCTCGCAGGCGCCGTTAAAAGG
ACATATTGAGAAGGTGGGTTTACTCGTCCCCGATACGATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTAT
TAAATATCCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGGATGGTCGACAAGGAGAAAATCGTTGATGCCATT
GAAGAATTTCATAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAATGAATACAGCGAAATTTTCAACTTGATCAGTGA
AGATTATCCGAAAACACAATTTATCACGGTCAATGGAGGCAAGCCTCAAGCTGATAATGTCACAAACGTCACGTTTAAAG
GAGAAGCAATGGGCTTTTTCGGAGGCATGACAGCAGCACATATGTCCAAAACAAAAAAGATTGGTATTCTGGCTACATAT
GATTGGCAAAGTGAAGTAGACGGTTTTATCAAAGGTGCAAAATATCAGGACGAACATGTGCAAGTTCTAGCGGAATTTGT
CGAAAACTGGGATGATGCTGACAAAGCGGTGAACCTCTATCAAAAATTGAAAAAACAAGGTGTAGATGTTGTGTATCCAG
CAGGTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAAACGACAATTTATCTGCGATCGGATATGTCACTGATCAA
TCCAACCTTGGAAGCCATACGGTGTTAACTAGCACAGTACAGCATGTCGATAAAGCGTACAGTATCATTGCGAAGAAGTT
TAATGAAGGCAAGCTAAACGAACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGCT
CAACCATAGACCGCGCTTTTGTGAAAGACATTGAGAAGGATATTGCGAATTACAAAAAAACAGGCAAACTGCCAAATGAA
AAGTGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

64.65

97.819

0.632