Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIS79_RS05300 Genome accession   NZ_CP085389
Coordinates   1047200..1048150 (+) Length   316 a.a.
NCBI ID   WP_017366964.1    Uniprot ID   A0A9X0FWU4
Organism   Bacillus altitudinis strain CMF5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042200..1053150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS05280 (LIS79_05280) - 1043435..1043917 (+) 483 WP_025207098.1 hypothetical protein -
  LIS79_RS05285 (LIS79_05285) - 1043948..1045387 (-) 1440 WP_252224909.1 PLP-dependent aminotransferase family protein -
  LIS79_RS05290 (LIS79_05290) - 1045531..1046700 (+) 1170 WP_048001723.1 MFS transporter -
  LIS79_RS05295 (LIS79_05295) - 1046763..1047041 (+) 279 WP_048001722.1 barstar family protein -
  LIS79_RS05300 (LIS79_05300) ceuB 1047200..1048150 (+) 951 WP_017366964.1 ABC transporter permease Machinery gene
  LIS79_RS05305 (LIS79_05305) - 1048143..1049093 (+) 951 WP_144740683.1 iron chelate uptake ABC transporter family permease subunit -
  LIS79_RS05310 (LIS79_05310) - 1049084..1049842 (+) 759 WP_019743341.1 ATP-binding cassette domain-containing protein -
  LIS79_RS05315 (LIS79_05315) - 1049865..1050809 (+) 945 WP_129548218.1 siderophore ABC transporter substrate-binding protein -
  LIS79_RS05320 (LIS79_05320) - 1050949..1051905 (+) 957 WP_007499147.1 LCP family protein -
  LIS79_RS05325 (LIS79_05325) - 1051940..1052374 (-) 435 WP_039167431.1 hypothetical protein -
  LIS79_RS05330 (LIS79_05330) - 1052460..1052822 (-) 363 WP_017360224.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34945.28 Da        Isoelectric Point: 9.7475

>NTDB_id=617329 LIS79_RS05300 WP_017366964.1 1047200..1048150(+) (ceuB) [Bacillus altitudinis strain CMF5]
MKLYQLSLLFVCLACASLFVGVQDLSLLQLFHLSDEQMNTLFSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILTAMLVFTQASPLMKMAIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=617329 LIS79_RS05300 WP_017366964.1 1047200..1048150(+) (ceuB) [Bacillus altitudinis strain CMF5]
ATGAAGTTGTACCAATTAAGTTTGTTGTTTGTGTGTTTGGCATGTGCGTCGCTGTTTGTCGGAGTACAGGACCTGTCTCT
TTTACAGTTGTTTCATCTATCAGATGAACAAATGAACACCTTATTTTCAAGTCGCATCCCGCGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTGAGCTTATGCGGTTTTATCATGCAAAGCATGACGAGAAATAAATTTGTCTCTCCAACGACTGCA
GGAACAATGGATTGGGCCAAGCTGGGTATTTTAACCGCTATGCTTGTTTTTACACAAGCAAGCCCGCTGATGAAAATGGC
GATTGCGTTTTTATTTACGTTAGCTGGCAATCTATTATTCTTAAAAATTCTACGCCATATTAAGGTGAACGATACGATCT
ACGTACCGTTAGTCGGCTTAATGTTTGGCGGAATTGTTAGTTCAATTTCCACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTGCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
TCTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGTATGGGTGAGAGCTTTGCCGTCAATTTAGGTT
TAACGTATAAACGTGTCATGGCAGTTGGTTTGGTGATTGTTTCGATGATTACTTCTGTAACGATTTTGACTGTTGGCATG
CTACCATTCCTTGGCTTAATCATTCCGAATATTGTATCGATCTACCGAGGGGATCACTTGAAAAAGAGCCTGCCGCATAC
GGCTTTATTAGGGGCCATTTTTGTGCTCATATGTGACGTACTCGGACGGGTGATCATTTATCCATATGAAATATCTGTCG
GGCTTATGGTCGGCATCATTGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAGCGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52

94.937

0.494