Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LIS79_RS05270 Genome accession   NZ_CP085389
Coordinates   1041305..1041883 (+) Length   192 a.a.
NCBI ID   WP_046526639.1    Uniprot ID   A0A9X0FWV9
Organism   Bacillus altitudinis strain CMF5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036305..1046883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS05250 (LIS79_05250) - 1036798..1038093 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  LIS79_RS05255 (LIS79_05255) - 1038185..1039717 (-) 1533 WP_025207048.1 FAD-dependent oxidoreductase -
  LIS79_RS05260 (LIS79_05260) - 1039860..1040720 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  LIS79_RS05265 (LIS79_05265) - 1040779..1041015 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  LIS79_RS05270 (LIS79_05270) comK 1041305..1041883 (+) 579 WP_046526639.1 competence protein ComK Regulator
  LIS79_RS05275 (LIS79_05275) - 1042027..1043133 (+) 1107 WP_025207097.1 alanine racemase -
  LIS79_RS05280 (LIS79_05280) - 1043435..1043917 (+) 483 WP_025207098.1 hypothetical protein -
  LIS79_RS05285 (LIS79_05285) - 1043948..1045387 (-) 1440 WP_252224909.1 PLP-dependent aminotransferase family protein -
  LIS79_RS05290 (LIS79_05290) - 1045531..1046700 (+) 1170 WP_048001723.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22376.41 Da        Isoelectric Point: 8.8031

>NTDB_id=617328 LIS79_RS05270 WP_046526639.1 1041305..1041883(+) (comK) [Bacillus altitudinis strain CMF5]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSRVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=617328 LIS79_RS05270 WP_046526639.1 1041305..1041883(+) (comK) [Bacillus altitudinis strain CMF5]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGTGTATATTCAAGAGTGATCGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609