Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LIS79_RS04270 Genome accession   NZ_CP085389
Coordinates   858609..859400 (+) Length   263 a.a.
NCBI ID   WP_017358838.1    Uniprot ID   A0A5K1NDE0
Organism   Bacillus altitudinis strain CMF5     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 853609..864400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS04235 (LIS79_04235) - 853697..854245 (+) 549 WP_252224881.1 thioredoxin family protein -
  LIS79_RS04240 (LIS79_04240) - 854584..855051 (+) 468 WP_007496690.1 DUF393 domain-containing protein -
  LIS79_RS04245 (LIS79_04245) - 855087..856343 (-) 1257 WP_008341668.1 transcriptional regulator -
  LIS79_RS04250 (LIS79_04250) - 856614..857201 (+) 588 WP_252224884.1 nitroreductase -
  LIS79_RS04255 (LIS79_04255) - 857237..857392 (-) 156 WP_008341997.1 YfhD family protein -
  LIS79_RS04260 (LIS79_04260) - 857454..857564 (-) 111 WP_017358836.1 YfhE family protein -
  LIS79_RS04265 (LIS79_04265) - 857617..858513 (-) 897 WP_024720284.1 TIGR01777 family oxidoreductase -
  LIS79_RS04270 (LIS79_04270) recX 858609..859400 (+) 792 WP_017358838.1 recombination regulator RecX Regulator
  LIS79_RS04275 (LIS79_04275) - 859404..859718 (+) 315 WP_008341991.1 YfhH family protein -
  LIS79_RS04280 (LIS79_04280) - 859742..859915 (-) 174 WP_003217811.1 YpzG family protein -
  LIS79_RS04285 (LIS79_04285) - 859941..860090 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  LIS79_RS04290 (LIS79_04290) - 860207..860479 (+) 273 WP_017366871.1 YfhJ family protein -
  LIS79_RS04295 (LIS79_04295) - 860781..861764 (+) 984 WP_017366872.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30630.03 Da        Isoelectric Point: 7.0789

>NTDB_id=617324 LIS79_RS04270 WP_017358838.1 858609..859400(+) (recX) [Bacillus altitudinis strain CMF5]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKDIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPNDLQLEE
AVKQVLKLVKKEKNRSAKEIEQRIKLQLQRKGFSFDIIDKALQEAYDGQEEEKEEEALHYMLEKAKRKVGYDGSFEKKMK
VKQFLYRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=617324 LIS79_RS04270 WP_017358838.1 858609..859400(+) (recX) [Bacillus altitudinis strain CMF5]
ATGCCCTATATTACGAAAATCTCTGCTCAGAAAAACAATACAGAACGCGTGAACATCTTTCTTGATGAAAAGTACGCTTT
TAGCGTTGATCTAGATGTGCTTGTCCAGCATGATTTGAAAAAGGGAAAAGAGCTGGACGAAGCCGATATCATAGAGATTC
AATTCGGTGATGCAGTAAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCGTATCGGATGAGATCAGTGAAAGAAGTC
ACCGATTATTTGACGAAAAAAGACATACCAGCACCTGCTATTAGTGAAATTATACACAAATTAAAACATTATAAGTATGT
AAATGATCTTGAATTTGCAGAAGCGTATGTAAGCACCCACCGAAAAACGAATAGCAAAGGCCCGTCAGTGCTAAAAAAAG
AATTAAAGCTGAAAGGCATAGACGATGACACCATCGAACAAGCACTATCGCAATATCCGAATGATTTGCAGCTAGAGGAA
GCAGTGAAGCAAGTGCTGAAGCTGGTTAAGAAAGAGAAAAACCGGTCCGCAAAAGAAATTGAACAGCGTATCAAATTGCA
GCTTCAGCGAAAAGGATTTTCATTTGATATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTTCACTATATGCTTGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAGAAAAAAATGAAA
GTGAAGCAATTCCTTTACCGAAAAGGATTTGATCTTGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NDE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.498

100

0.635