Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MOP79_RS07945 Genome accession   NZ_CP102583
Coordinates   1551149..1551745 (+) Length   198 a.a.
NCBI ID   WP_000966754.1    Uniprot ID   A0A1X1J688
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1546149..1556745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS07920 - 1546427..1546861 (+) 435 WP_000355907.1 cytidine deaminase -
  MOP79_RS07925 - 1546948..1547112 (+) 165 Protein_1572 N-acetylneuraminate lyase -
  MOP79_RS07930 - 1547130..1548014 (+) 885 WP_000222983.1 ROK family protein -
  MOP79_RS07935 - 1548030..1548881 (-) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  MOP79_RS07940 pbp2b 1549081..1551138 (+) 2058 WP_078152568.1 penicillin-binding protein 2B -
  MOP79_RS07945 recR 1551149..1551745 (+) 597 WP_000966754.1 recombination mediator RecR Machinery gene
  MOP79_RS07950 - 1551921..1552964 (+) 1044 WP_000814624.1 D-alanine--D-alanine ligase -
  MOP79_RS07955 murF 1553048..1554421 (+) 1374 WP_000778686.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  MOP79_RS07960 - 1554408..1555019 (+) 612 WP_000857992.1 NUDIX hydrolase -
  MOP79_RS07965 - 1555110..1555814 (+) 705 WP_001055246.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21732.87 Da        Isoelectric Point: 4.4927

>NTDB_id=617322 MOP79_RS07945 WP_000966754.1 1551149..1551745(+) (recR) [Streptococcus pneumoniae strain D39Mega17545]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=617322 MOP79_RS07945 WP_000966754.1 1551149..1551745(+) (recR) [Streptococcus pneumoniae strain D39Mega17545]
ATGCTTTATCCAACACCTATTGCTAAGCTAATTGACAGTTATTCTAAGTTACCGGGTATCGGGATTAAGACGGCTACCCG
TCTGGCCTTTTATACGATTGGGATGTCTGATGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACCTACTGTTCCATTTGTGGACGTTTGACAGACGACGATCCTTGCTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTGGTGCTAGAGGATAGTCGGGATGTGGCAGCCATGGAAAACATCCAAGAATACCATGGCCTCTATCATGTCCT
GCATGGCCTTATTTCTCCTATGAATGGTATCAGTCCAGATGATATCAATCTCAAGAGTCTCATGACTCGTCTGATGGATA
GTGAGGTTTCAGAAGTAATCGTAGCAACCAATGCCACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATTAAGGTCACTCGCCTGGCACGAGGCCTTGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
CCTCTTACGGGCTATTGAAAATCGAACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485