Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LIS79_RS00020 Genome accession   NZ_CP085389
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_035390152.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS00005 (LIS79_00005) dnaA 1..1341 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  LIS79_RS00010 (LIS79_00010) dnaN 1538..2674 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  LIS79_RS00015 (LIS79_00015) yaaA 2825..3040 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  LIS79_RS00020 (LIS79_00020) recF 3057..4169 (+) 1113 WP_035390152.1 DNA replication/repair protein RecF Machinery gene
  LIS79_RS00025 (LIS79_00025) remB 4187..4432 (+) 246 WP_008360920.1 extracellular matrix regulator RemB -
  LIS79_RS00030 (LIS79_00030) gyrB 4490..6406 (+) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LIS79_RS00035 (LIS79_00035) gyrA 6640..9135 (+) 2496 WP_035390155.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42601.67 Da        Isoelectric Point: 7.1297

>NTDB_id=617317 LIS79_RS00020 WP_035390152.1 3057..4169(+) (recF) [Bacillus altitudinis strain CMF5]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLNLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=617317 LIS79_RS00020 WP_035390152.1 3057..4169(+) (recF) [Bacillus altitudinis strain CMF5]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAACCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAACTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832