Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SAIN_RS00895 Genome accession   NC_022244
Coordinates   169434..170852 (+) Length   472 a.a.
NCBI ID   WP_142350297.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 164434..175852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS00875 (SAIN_0173) dinB 165137..166204 (+) 1068 WP_021001217.1 DNA polymerase IV -
  SAIN_RS00880 (SAIN_0174) - 166470..167574 (-) 1105 Protein_140 IS110 family transposase -
  SAIN_RS00885 (SAIN_0176) - 167906..168937 (+) 1032 WP_021001218.1 S66 peptidase family protein -
  SAIN_RS00890 (SAIN_0177) - 169031..169474 (+) 444 WP_021001219.1 dUTP diphosphatase -
  SAIN_RS00895 (SAIN_0178) radA 169434..170852 (+) 1419 WP_142350297.1 DNA repair protein RadA Machinery gene
  SAIN_RS00900 (SAIN_0179) gltX 171060..172517 (+) 1458 WP_021001221.1 glutamate--tRNA ligase -
  SAIN_RS00905 (SAIN_0180) dapD 172782..173480 (+) 699 WP_021001222.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SAIN_RS00910 (SAIN_0181) - 173493..174623 (+) 1131 WP_021001223.1 N-acetyldiaminopimelate deacetylase -
  SAIN_RS00915 - 174668..175195 (+) 528 WP_003027033.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51522.28 Da        Isoelectric Point: 5.7979

>NTDB_id=61730 SAIN_RS00895 WP_142350297.1 169434..170852(+) (radA) [Streptococcus anginosus C1051]
MVCGQVVLEALGIKKEESIIAKKKSTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARVSLTGEKSRPMKLAE
VTSINVNRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMHQIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQLFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPETIEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=61730 SAIN_RS00895 WP_142350297.1 169434..170852(+) (radA) [Streptococcus anginosus C1051]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAATCGACATT
TGTTTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGGCGTTGTCCGAATTGTGGTGCTTGGTCGTCTTTTGTCG
AAGAAGTAGAAGTTACAGAGGTTAAGAATGCGCGTGTTTCGCTGACGGGTGAAAAAAGTCGACCGATGAAGTTAGCGGAG
GTGACTTCTATCAATGTCAACCGTACCAAGACAGATATGGATGAGTTTAACCGCGTCTTGGGTGGCGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGATCCCGGTATTGGGAAATCGACACTTTTATTGCAGGTTTCAACCCAACTCTCTCACA
AGGGAACGGTATTGTATGTCAGTGGGGAAGAGTCTGCTGAGCAGATTAAGTTGCGTGCGGAGCGATTAGGCGATATTGAC
AGTGAGTTTTATCTTTATGCCGAGACCAATATGCATCAGATTCGTGCTGAGATTGAAAAAATTAAGCCAGATTTCTTGAT
TATAGACTCCATTCAGACGATTCTATCGCCAGAAATTTCTAGTGTGCAAGGCTCGGTTTCGCAAGTACGAGAAGTGACAG
CGGAGCTGATGCAGTTGGCAAAAACCAACAATATTGCCACCTTTATCGTGGGTCATATGACCAAGGAAGGTACCTTGGCT
GGACCTAGAACCTTGGAACACATGGTGGATACGGTACTTTATTTTGAAGGTGAGCGACAGCATACTTTTCGTATTTTGCG
GGCGGTCAAAAACCGCTTCGGCTCTACGAATGAAATCGGCATTTTTGAGATGCAGTCAGGTGGTCTGGTTGAAGTGCTCA
ATCCTAGCCAGCTTTTCTTAGAGGAGCGTTTAGATGGAGCAACAGGCTCTTCTATCGTGGTGACCATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCGACCATGTTTGGCAATGCCAAGCGGACAACGACAGGATTGGACTT
TAATCGCGCCAGTCTGATTATGGCTGTTTTGGAAAAGCGAGCAGGGCTATTATTGCAAAATCAGGATGCCTACCTAAAGT
CAGCAGGCGGTGTCAAATTGGATGAGCCAGCCATTGACTTAGCTGTTGCTGTCGCAATTGCTTCTAGTTATAAAGACTTG
CCAACGAATCCACAAGAATGTTTTATTGGAGAAATCGGTCTGACGGGGGAAATCCGCCGTGTTAATCGCATTGAGCAACG
CATTAATGAAGCTGCTAAGCTAGGCTTCACCAAAGTTTACGCTCCTAAAAACTCTCTGAACGGATTGAACATTCCCGAAA
CTATTGAAGTTATTGGTGTAACAACGATTGGTGAAGTGTTGAAGAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.372

95.763

0.875
  radA Streptococcus pneumoniae D39

91.372

95.763

0.875
  radA Streptococcus pneumoniae R6

91.372

95.763

0.875
  radA Streptococcus pneumoniae TIGR4

91.372

95.763

0.875
  radA Streptococcus mitis SK321

91.372

95.763

0.875
  radA Streptococcus mitis NCTC 12261

91.15

95.763

0.873
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

96.822

0.608

Multiple sequence alignment