Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LIS75_RS07095 Genome accession   NZ_CP085388
Coordinates   1354648..1355244 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMF18     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349648..1360244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS75_RS07065 (LIS75_07075) - 1349862..1350317 (+) 456 WP_044053160.1 flavodoxin -
  LIS75_RS07070 (LIS75_07080) dapD 1350399..1351109 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LIS75_RS07075 (LIS75_07085) - 1351180..1352304 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  LIS75_RS07080 (LIS75_07090) - 1352365..1352610 (+) 246 WP_003154596.1 YkuS family protein -
  LIS75_RS07085 (LIS75_07095) - 1352644..1353450 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  LIS75_RS07090 (LIS75_07100) - 1353738..1354196 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  LIS75_RS07095 (LIS75_07105) rok 1354648..1355244 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LIS75_RS07100 (LIS75_07110) - 1355265..1356257 (-) 993 WP_230639829.1 sporulation protein -
  LIS75_RS07105 (LIS75_07115) - 1356403..1357005 (+) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  LIS75_RS07110 (LIS75_07120) - 1357057..1358076 (+) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  LIS75_RS07115 (LIS75_07125) glp 1358094..1359386 (+) 1293 WP_052585820.1 gephyrin-like molybdotransferase Glp -
  LIS75_RS07120 (LIS75_07130) mobB 1359347..1359868 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=617271 LIS75_RS07095 WP_003154591.1 1354648..1355244(+) (rok) [Bacillus velezensis strain CMF18]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=617271 LIS75_RS07095 WP_003154591.1 1354648..1355244(+) (rok) [Bacillus velezensis strain CMF18]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843