Detailed information NTG0617239

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LIN44_RS16020
• Genome accession: NZ_CP085344
• Coordinates: 3481274..3482431 (+)
• Length: 385 a.a.
• NCBI ID: WP_227312918.1
• Uniprot ID: -
• Organism: Cupriavidus sp. MP-37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3476274..3487431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN44_RS15995 (LIN44_15995)	-	3476337..3476597 (-)	261	WP_227312914.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LIN44_RS16000 (LIN44_16000)	coaD	3476665..3477150 (-)	486	WP_012351649.1	pantetheine-phosphate adenylyltransferase	-
LIN44_RS16005 (LIN44_16005)	rsmD	3477384..3478031 (-)	648	WP_227312915.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LIN44_RS16010 (LIN44_16010)	-	3478093..3479475 (-)	1383	WP_227312916.1	pitrilysin family protein	-
LIN44_RS16015 (LIN44_16015)	-	3479486..3481033 (-)	1548	WP_227312917.1	pitrilysin family protein	-
LIN44_RS16020 (LIN44_16020)	pilA	3481274..3482431 (+)	1158	WP_227312918.1	signal recognition particle-docking protein FtsY	Machinery gene
LIN44_RS16025 (LIN44_16025)	maiA	3482516..3483163 (-)	648	WP_227312919.1	maleylacetoacetate isomerase	-
LIN44_RS16030 (LIN44_16030)	-	3483168..3483869 (-)	702	WP_227312920.1	fumarylacetoacetate hydrolase family protein	-
LIN44_RS16035 (LIN44_16035)	-	3484077..3484718 (+)	642	WP_227312921.1	ANTAR domain-containing response regulator	-
LIN44_RS16040 (LIN44_16040)	-	3485105..3486433 (+)	1329	WP_227312922.1	CmpA/NrtA family ABC transporter substrate-binding protein	-
LIN44_RS16045 (LIN44_16045)	ntrB	3486465..3487355 (+)	891	WP_227312923.1	nitrate ABC transporter permease	-

Sequence

Protein

• Length: 385 a.a.
• Molecular weight: 40954.55 Da
• Isoelectric Point: 6.3103

>NTDB_id=617239 LIN44_RS16020 WP_227312918.1 3481274..3482431(+) (pilA) [Cupriavidus sp. MP-37]
MFSFWKKRKAEPAPVEAPVEAPAPAPAPEVSAPAPAPSPTPTPTPAPAPVPVPVPVPVPAQVPPPPPAPVAAEALELVPP
PAPSAEARQGWMQRLRTGLSKTSRNLGTLFVGVKVDEDLFEELETALLMADAGVEATEYLLGELRKRVKSERIETAEGVK
AALRELLTQLLRPLEKTMALGREQPLVMMIAGVNGAGKTTSIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLAIWGERNN
VTVVAQESGDPAAVIFDAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNALQ
QTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKAEEFAEALLG

Nucleotide

• Length: 1158 bp

>NTDB_id=617239 LIN44_RS16020 WP_227312918.1 3481274..3482431(+) (pilA) [Cupriavidus sp. MP-37]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAGCCGGCGCCCGTCGAGGCCCCAGTCGAGGCGCCCGCGCCGGCCCCGGC
GCCGGAAGTGTCGGCACCCGCCCCGGCACCGTCCCCGACGCCCACTCCCACGCCAGCGCCAGCGCCGGTGCCGGTTCCCG
TGCCCGTCCCCGTGCCGGCGCAAGTGCCCCCGCCCCCGCCAGCGCCGGTGGCAGCCGAGGCGCTGGAACTGGTGCCGCCG
CCCGCGCCCAGCGCCGAAGCCAGGCAGGGCTGGATGCAGCGCCTGCGCACCGGCCTGTCCAAGACCAGCCGCAACCTCGG
CACGCTGTTCGTCGGCGTCAAGGTCGACGAAGACCTGTTCGAGGAACTGGAAACTGCGCTGCTGATGGCCGACGCCGGCG
TCGAAGCCACCGAGTACCTGCTGGGCGAGCTGCGCAAGCGCGTCAAGTCCGAACGCATCGAAACCGCCGAGGGCGTCAAG
GCGGCGCTGCGCGAGCTGCTGACGCAGCTGCTGCGCCCGCTCGAAAAGACCATGGCGCTGGGCCGCGAGCAGCCGCTGGT
GATGATGATTGCTGGGGTCAACGGCGCCGGCAAGACGACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGCGCTATGACC
AGAAGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGCGATCTGGGGCGAACGCAACAAC
GTCACCGTGGTGGCGCAGGAAAGCGGCGACCCCGCTGCGGTGATCTTCGACGCCGTCAACGCCGCCAAGGCGCGCGGCAT
CGACATCGTCATGGCCGACACCGCCGGGCGCCTGCCGACGCAGCTGCACCTGATGGAGGAGCTGAAGAAGGTCAAGCGCG
TGATCAGCAAGGCCATGCCCAGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGCCAATACCGGCCAGAACGCCCTCCAG
CAAACCCGCGCCTTCGACGATGCGCTCGGGCTTACCGGCCTGATCGTGACCAAGCTCGACGGCACCGCCAAGGGCGGCAT
CCTGGCGGCGATCGCGCGCCAGCGCCCCGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGCAGCCGT
TCAAGGCGGAGGAGTTCGCCGAGGCACTGCTGGGTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (186-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (109-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.404	100	0.566