Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LIN44_RS15905 Genome accession   NZ_CP085344
Coordinates   3457123..3458601 (+) Length   492 a.a.
NCBI ID   WP_227312903.1    Uniprot ID   -
Organism   Cupriavidus sp. MP-37     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3452123..3463601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN44_RS15880 (LIN44_15880) - 3453620..3453877 (-) 258 WP_227314428.1 hypothetical protein -
  LIN44_RS15885 (LIN44_15885) - 3453764..3454747 (+) 984 WP_115706200.1 SIS domain-containing protein -
  LIN44_RS15890 (LIN44_15890) lptC 3454794..3455423 (+) 630 WP_227312900.1 LPS export ABC transporter periplasmic protein LptC -
  LIN44_RS15895 (LIN44_15895) lptA 3455542..3456189 (+) 648 WP_227312901.1 lipopolysaccharide transport periplasmic protein LptA -
  LIN44_RS15900 (LIN44_15900) lptB 3456198..3456998 (+) 801 WP_227312902.1 LPS export ABC transporter ATP-binding protein -
  LIN44_RS15905 (LIN44_15905) rpoN/rpoN1 3457123..3458601 (+) 1479 WP_227312903.1 RNA polymerase factor sigma-54 Machinery gene
  LIN44_RS15910 (LIN44_15910) hpf 3458650..3459000 (+) 351 WP_010814386.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LIN44_RS15915 (LIN44_15915) - 3459366..3459821 (+) 456 WP_018008706.1 PTS sugar transporter subunit IIA -
  LIN44_RS15920 (LIN44_15920) hprK 3459904..3460875 (+) 972 WP_012351664.1 HPr(Ser) kinase/phosphatase -
  LIN44_RS15925 (LIN44_15925) - 3461046..3461438 (+) 393 WP_227312904.1 PsiF family protein -
  LIN44_RS15930 (LIN44_15930) rapZ 3461547..3462422 (+) 876 WP_227312905.1 RNase adapter RapZ -
  LIN44_RS15935 (LIN44_15935) - 3462515..3463174 (+) 660 WP_227312906.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54588.88 Da        Isoelectric Point: 4.9659

>NTDB_id=617238 LIN44_RS15905 WP_227312903.1 3457123..3458601(+) (rpoN/rpoN1) [Cupriavidus sp. MP-37]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQSAPAPAPAEPQ
GNGDARAEGGADDSYGDNSSGDDYGNGDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISARDKGLAIF
LIESLDDDGYLSASLEEICAELPEELEFDPDEVHAILTLLQSFDPPGVGARNAAECLALQLRRLTHPQRELALTIVTHHL
ELLAVRDYTRLKKALQVDEVALKAAHDLIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRINDMYA
QILRGAKGETGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=617238 LIN44_RS15905 WP_227312903.1 3457123..3458601(+) (rpoN/rpoN1) [Cupriavidus sp. MP-37]
ATGAAACCGTCGCTACAGCTCCGCCTCTCCCAGCACCTGGCACTGACCCCGCAGCTGCAACAGTCGATCCGGCTGCTGCA
GCTTTCCACGCTGGAATTGCAGCAGGAGGTCGAACAGGCGCTGACGGAAAACCCGCTGCTCGAGCGGGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTCGCGGCCGATGGCTCGGTCAACGTACAGAGCGCGCCCGCGCCCGCCCCGGCGGAGCCCCAG
GGCAATGGGGACGCCCGCGCCGAAGGCGGCGCCGATGACAGCTACGGCGACAACAGCAGCGGCGACGACTACGGCAACGG
CGACTGGAGCCTGGACGACTTCGCCCGCCGCCCGCAAGGCGACGAGGACGAAAAGACGCCGATGCAGCTGCGCGAGGCCG
AGCCCACGCTGCGCGAATACCTGATGGAGCAACTGACGCCGCTGAAGATCTCGGCGCGCGACAAGGGGCTCGCCATCTTC
CTGATCGAATCGCTCGACGACGATGGCTACCTGAGCGCCTCGCTCGAAGAGATCTGCGCGGAGCTGCCCGAAGAGCTCGA
GTTCGATCCCGACGAAGTCCACGCCATCCTGACGCTGCTGCAGAGCTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCCG
CCGAATGCCTGGCGCTGCAATTGCGCCGCCTGACCCACCCGCAGCGCGAACTGGCGCTGACCATCGTCACCCATCACCTG
GAACTGCTGGCGGTGCGTGACTACACGCGGCTGAAGAAGGCACTGCAGGTCGACGAAGTCGCGCTCAAGGCCGCGCATGA
CCTGATCCGCTCGCTGGCCCCGTACCCGGGCCACGCGTACAGCCGCCCCGAGGCCGATTTCGTTGTGCCAGATGTGTTCG
TGCGCAAGGGCGGCGGCGGCTGGATCGCGCAGCTCAATCCGGATGTGATGCCGAGACTGCGCATCAACGACATGTACGCG
CAGATCCTGCGCGGCGCAAAGGGCGAGACCGGCACCGCCGGGCTGCAGCAGAAGCTGCAGGAGGCGCGCTGGCTGATCAA
GAACATCCAGCAAAGGTTCGACACCATCCTGCGTGTCTCGCAGGCCATTGTCGAGCGTCAAAAGAACTTTTTCACTCACG
GTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGTTTACACGAGTCAACCATCTCCCGGGTG
ACGACCAATAAATACATGGCCACGCCGATGGGTACTTTCGAACTGAAGTACTTCTTCGGTAGCCACGTGTCCACCGAAAC
CGGTGGCGCGGCTTCATCAACGGCCATCCGCGCCTTGATCAAGCAACTGATAGGAGCCGAAGACCCGAGGAATCCCCTTT
CCGACAGTCGCATCGCCGAACTGCTGGGCGAGCAAGGCTTCGTTGTCGCACGCCGCACCGTCGCCAAGTATCGCGAAGCC
TTGAAAATCCCCGCAGTGAATCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.2

100

0.805