Detailed information NTG0617230

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LIN44_RS08650
• Genome accession: NZ_CP085344
• Coordinates: 1838073..1839434 (+)
• Length: 453 a.a.
• NCBI ID: WP_227311811.1
• Uniprot ID: -
• Organism: Cupriavidus sp. MP-37
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1840141..1840977	1838073..1839434	flank	707

Gene organization within MGE regions

Location: 1838073..1840977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN44_RS08650 (LIN44_08650)	radA	1838073..1839434 (+)	1362	WP_227311811.1	DNA repair protein RadA	Machinery gene
LIN44_RS08655 (LIN44_08655)	-	1839586..1840071 (+)	486	WP_227314366.1	disulfide bond formation protein B	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48345.59 Da
• Isoelectric Point: 7.2390

>NTDB_id=617230 LIN44_RS08650 WP_227311811.1 1838073..1839434(+) (radA) [Cupriavidus sp. MP-37]
MAKSKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAESAANKRFQPLAASATVRRLAEIEAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPSLGLLAEIQLEKIQATLEA
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide

• Length: 1362 bp

>NTDB_id=617230 LIN44_RS08650 WP_227311811.1 1838073..1839434(+) (radA) [Cupriavidus sp. MP-37]
TTGGCCAAGAGCAAGACTGTCTATACCTGTACCGAATGCGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAAACGGTGGCGGAATCCGCCGCCAACAAGCGCTTCCAGCCGCTGGCGGCATCGGCCA
CGGTGCGCAGGCTGGCGGAGATCGAGGCGGCCGACGTGCCGCGCTTTTCCAGCGGCATCGATGAGTTCGACCGGGTCCTG
GGCGGCGGGCTGGTGTCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGTATCGGCAAGTCCACGCTGTTGCTGCAGGC
GCTGGCCAACCTGGCCGGACAGCGCCGCGTGCTCTATGTCAGCGGCGAGGAATCCGGCGCACAGATCGCGTTGCGCGCGC
AGCGCCTGGGCGTGGAAAGTCCGTCGCTGGGGCTGCTGGCCGAAATCCAGCTGGAGAAGATTCAGGCCACACTGGAAGCG
GAAAAGCCCGAGGTCGCGGTAATCGATTCGATCCAGACGCTGTATTCCGAGGCGCTGACCTCGGCGCCGGGGTCGGTGGC
GCAGGTGCGCGAATGCGCGGCGCAGCTTACGCGCATTGCCAAGAGCAGCGGCACCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAGGGCAGCCTGGCAGGGCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTACTTCGAAGGCGATACCCAT
TCGTCGCACCGGCTGATCCGCGCCTTCAAGAACCGTTTCGGCGCGGTCAATGAACTGGGCGTGTTCGCGATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAAGAGACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGGCCGCTGCTGGTCGAAATCCAGGCGCTGGTCGATACCGCGCATGTGCCCAACCCGCGCCGG
CTGGCGGTGGGGCTGGAGCAGAACCGGCTGGCCTTGCTGCTGGCAGTGCTGCACCGGCACGCCGGCATCGCCTGCTTTGA
CCAGGACGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATCACCGAGCCCGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGCGAAATCCGCCCC
AGCCCGCGCGGGCAGGAGCGCCTGAAGGAAGCAGCCAAGCTGGGCTTCACGCTGGCCGTGATCCCGAAGGCCAACGCGCC
CAAGCAGAAGATCGACGGGCTCGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCCATCGACCGCGTGCGGCATCTGGATT
GA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (60-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.885	99.779	0.508
radA	Streptococcus mitis SK321	46.696	100	0.468
radA	Streptococcus pneumoniae D39	46.593	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.593	100	0.468
radA	Streptococcus pneumoniae R6	46.593	100	0.468
radA	Streptococcus pneumoniae Rx1	46.593	100	0.468
radA	Streptococcus mitis NCTC 12261	46.374	100	0.466