Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LI754_RS11385 Genome accession   NZ_CP085320
Coordinates   2274795..2275190 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2269795..2280190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS11360 thiE 2270395..2271036 (-) 642 WP_044290685.1 thiamine phosphate synthase -
  LI754_RS11365 thiM 2271038..2271829 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  LI754_RS11370 thiD 2271813..2272643 (-) 831 WP_044290686.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LI754_RS11375 tenA 2272636..2273325 (-) 690 WP_000396067.1 thiaminase II -
  LI754_RS11380 sceD 2273711..2274406 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  LI754_RS11385 ssb 2274795..2275190 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LI754_RS11390 - 2275384..2275824 (+) 441 WP_000846746.1 YwpF-like family protein -
  LI754_RS11395 fabZ 2275883..2276323 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LI754_RS11400 murA 2276357..2277622 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LI754_RS11405 - 2277733..2277966 (-) 234 WP_000384523.1 DUF1146 family protein -
  LI754_RS11410 - 2278098..2278190 (-) 93 WP_031864518.1 hypothetical protein -
  LI754_RS11415 - 2278560..2278964 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=617211 LI754_RS11385 WP_000932694.1 2274795..2275190(-) (ssb) [Staphylococcus aureus strain CJFA-182]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=617211 LI754_RS11385 WP_000932694.1 2274795..2275190(-) (ssb) [Staphylococcus aureus strain CJFA-182]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992