Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NUX13_RS10080 Genome accession   NZ_CP102580
Coordinates   2137865..2138500 (-) Length   211 a.a.
NCBI ID   WP_000264031.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A9844     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2132865..2143500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUX13_RS10055 (NUX13_10055) - 2132921..2133901 (-) 981 WP_001075413.1 DNA polymerase III subunit delta' -
  NUX13_RS10060 (NUX13_10060) kdsB 2133913..2134674 (-) 762 WP_000680703.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NUX13_RS10065 (NUX13_10065) lpxK 2134684..2135694 (-) 1011 WP_000050480.1 tetraacyldisaccharide 4'-kinase -
  NUX13_RS10070 (NUX13_10070) msbA 2135697..2137424 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  NUX13_RS10075 (NUX13_10075) - 2137421..2137849 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  NUX13_RS10080 (NUX13_10080) exbB 2137865..2138500 (-) 636 WP_000264031.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NUX13_RS10085 (NUX13_10085) - 2138550..2139437 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  NUX13_RS10090 (NUX13_10090) - 2139434..2140216 (-) 783 WP_000057212.1 ParA family protein -
  NUX13_RS10095 (NUX13_10095) rsmG 2140238..2140870 (-) 633 WP_000553197.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NUX13_RS10100 (NUX13_10100) murU 2140958..2141647 (-) 690 WP_000646457.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NUX13_RS10105 (NUX13_10105) - 2141647..2142660 (-) 1014 WP_001096099.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23238.21 Da        Isoelectric Point: 6.4861

>NTDB_id=617211 NUX13_RS10080 WP_000264031.1 2137865..2138500(-) (exbB) [Acinetobacter baumannii strain A9844]
MWELVKAGGWLMLPLILCSILTVAIIIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=617211 NUX13_RS10080 WP_000264031.1 2137865..2138500(-) (exbB) [Acinetobacter baumannii strain A9844]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTATTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398