Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LI754_RS08285 Genome accession   NZ_CP085320
Coordinates   1695940..1696386 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690940..1701386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS08255 gcvPA 1691866..1693212 (-) 1347 WP_044289744.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LI754_RS08260 gcvT 1693232..1694323 (-) 1092 WP_044289746.1 glycine cleavage system aminomethyltransferase GcvT -
  LI754_RS08265 - 1694482..1695006 (-) 525 WP_001015121.1 shikimate kinase -
  LI754_RS08270 - 1694996..1695142 (-) 147 WP_001789879.1 hypothetical protein -
  LI754_RS08275 comGF 1695239..1695736 (-) 498 WP_052502239.1 competence type IV pilus minor pilin ComGF Machinery gene
  LI754_RS08280 comGE 1695654..1695953 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LI754_RS08285 comGD 1695940..1696386 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  LI754_RS08290 comGC 1696364..1696675 (-) 312 WP_044289753.1 competence type IV pilus major pilin ComGC Machinery gene
  LI754_RS08295 comGB 1696689..1697759 (-) 1071 WP_044289754.1 competence type IV pilus assembly protein ComGB Machinery gene
  LI754_RS08300 comGA 1697731..1698705 (-) 975 WP_044289756.1 competence type IV pilus ATPase ComGA Machinery gene
  LI754_RS08305 - 1698758..1699381 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LI754_RS08310 - 1699378..1699707 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LI754_RS08315 - 1699707..1700693 (-) 987 WP_000161314.1 ROK family glucokinase -
  LI754_RS08320 - 1700690..1700893 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=617195 LI754_RS08285 WP_001788899.1 1695940..1696386(-) (comGD) [Staphylococcus aureus strain CJFA-182]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=617195 LI754_RS08285 WP_001788899.1 1695940..1696386(-) (comGD) [Staphylococcus aureus strain CJFA-182]
ATGGAGAAACAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1