Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   NUU05_RS05600 Genome accession   NZ_CP102538
Coordinates   1070292..1071362 (+) Length   356 a.a.
NCBI ID   WP_011681135.1    Uniprot ID   Q03KP9
Organism   Streptococcus thermophilus strain TH-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065292..1076362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS05585 (NUU05_05560) glgP 1065864..1068128 (+) 2265 WP_011681138.1 glycogen/starch/alpha-glucan family phosphorylase -
  NUU05_RS05590 (NUU05_05565) - 1068436..1068609 (-) 174 WP_224103188.1 hypothetical protein -
  NUU05_RS05595 (NUU05_05570) - 1069078..1070067 (+) 990 WP_011681136.1 lipoate--protein ligase -
  NUU05_RS05600 (NUU05_05575) xerS 1070292..1071362 (+) 1071 WP_011681135.1 tyrosine recombinase XerS Machinery gene
  NUU05_RS05605 (NUU05_05580) - 1071524..1074064 (-) 2541 WP_011225973.1 M1 family metallopeptidase -
  NUU05_RS05610 (NUU05_05585) phoU 1074198..1074851 (-) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  NUU05_RS05615 (NUU05_05590) pstB 1074879..1075637 (-) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41505.64 Da        Isoelectric Point: 9.6822

>NTDB_id=617130 NUU05_RS05600 WP_011681135.1 1070292..1071362(+) (xerS) [Streptococcus thermophilus strain TH-4]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=617130 NUU05_RS05600 WP_011681135.1 1070292..1071362(+) (xerS) [Streptococcus thermophilus strain TH-4]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATATAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGGGA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03KP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823