Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | NGFG_RS04110 | Genome accession | NC_022240 |
| Coordinates | 767553..769298 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae MS11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 732371..807431 | 767553..769298 | within | 0 |
| IS/Tn | 769985..770986 | 767553..769298 | flank | 687 |
Gene organization within MGE regions
Location: 732371..807431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGFG_RS03925 (NGFG_01052) | - | 732371..733441 (-) | 1071 | WP_003695318.1 | tyrosine-type recombinase/integrase | - |
| NGFG_RS03930 (NGFG_01051) | - | 733650..734429 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| NGFG_RS15480 | - | 735021..735230 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| NGFG_RS03945 (NGFG_01048) | dinB | 735329..736387 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| NGFG_RS03950 (NGFG_01047) | rep | 736457..738471 (-) | 2015 | Protein_752 | DNA helicase Rep | - |
| NGFG_RS03955 (NGFG_01046) | aroD | 738491..739255 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| NGFG_RS03960 (NGFG_01045) | recA | 739455..740501 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| NGFG_RS03970 (NGFG_01044) | - | 741154..741489 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NGFG_RS03975 (NGFG_01043) | dnaX | 741570..743693 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| NGFG_RS03980 (NGFG_01042) | mutL | 743788..745763 (-) | 1976 | Protein_757 | DNA mismatch repair endonuclease MutL | - |
| NGFG_RS03985 (NGFG_01041) | - | 745907..746092 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| NGFG_RS03990 (NGFG_01040) | - | 746103..746771 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| NGFG_RS03995 (NGFG_01039) | - | 746771..747484 (+) | 714 | WP_003688685.1 | tetratricopeptide repeat protein | - |
| NGFG_RS04000 (NGFG_01038) | purE | 747532..748017 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| NGFG_RS15905 | - | 748229..749094 (-) | 866 | Protein_762 | transposase | - |
| NGFG_RS04010 | - | 749411..749776 (+) | 366 | Protein_763 | transposase | - |
| NGFG_RS04015 (NGFG_01037) | - | 749783..750808 (+) | 1026 | Protein_764 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NGFG_RS04020 (NGFG_01036) | - | 751003..751659 (-) | 657 | WP_003688682.1 | response regulator | - |
| NGFG_RS04025 (NGFG_01035) | - | 751656..753425 (-) | 1770 | WP_003695308.1 | histidine kinase | - |
| NGFG_RS04030 (NGFG_01034) | - | 753632..754246 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| NGFG_RS04035 (NGFG_01033) | - | 754409..755026 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| NGFG_RS04040 (NGFG_01032) | - | 755034..755897 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| NGFG_RS04045 (NGFG_01031) | - | 755910..756344 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| NGFG_RS04050 (NGFG_01030) | rpe | 756490..757173 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| NGFG_RS04055 (NGFG_01029) | ruvB | 757418..758449 (-) | 1032 | WP_003695304.1 | Holliday junction branch migration DNA helicase RuvB | - |
| NGFG_RS04060 (NGFG_01028) | - | 758531..758839 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| NGFG_RS04070 (NGFG_01027) | - | 759257..760489 (-) | 1233 | WP_003695301.1 | multifunctional CCA addition/repair protein | - |
| NGFG_RS04075 (NGFG_01026) | - | 760568..762196 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| NGFG_RS04080 (NGFG_01025) | - | 762346..762720 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| NGFG_RS04085 (NGFG_01024) | - | 762769..764307 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| NGFG_RS04090 (NGFG_01023) | recR | 764374..764991 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| NGFG_RS14335 (NGFG_01022) | - | 765047..765325 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| NGFG_RS04100 (NGFG_01020) | - | 765551..766798 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| NGFG_RS04105 (NGFG_01019) | lolD | 766791..767486 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| NGFG_RS04110 (NGFG_01018) | recD | 767553..769298 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| NGFG_RS04115 | - | 769370..770016 (-) | 647 | Protein_783 | methyltransferase | - |
| NGFG_RS04120 (NGFG_02316) | - | 770024..770986 (+) | 963 | WP_025463956.1 | IS110 family transposase | - |
| NGFG_RS15050 | - | 771115..771574 (-) | 460 | Protein_785 | methyltransferase | - |
| NGFG_RS04130 (NGFG_01014) | lon | 771826..774288 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| NGFG_RS04135 (NGFG_01012) | - | 774470..774739 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| NGFG_RS04140 (NGFG_01011) | - | 774915..775349 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| NGFG_RS04145 (NGFG_01010) | - | 775342..776649 (-) | 1308 | WP_003695291.1 | homoserine dehydrogenase | - |
| NGFG_RS04150 (NGFG_01009) | - | 776845..777216 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| NGFG_RS04155 (NGFG_01008) | - | 777293..779215 (+) | 1923 | WP_003688635.1 | ATP-binding cassette domain-containing protein | - |
| NGFG_RS04160 | - | 779202..779597 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| NGFG_RS04165 (NGFG_01006) | - | 779688..780200 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| NGFG_RS04175 (NGFG_01004) | - | 780645..781340 (-) | 696 | WP_017147078.1 | DUF4400 domain-containing protein | - |
| NGFG_RS04180 (NGFG_01003) | traD | 781330..783372 (-) | 2043 | WP_003695288.1 | type IV conjugative transfer system coupling protein TraD | - |
| NGFG_RS04185 (NGFG_01002) | mobH | 783369..785921 (-) | 2553 | WP_003693100.1 | MobH family relaxase | - |
| NGFG_RS04190 (NGFG_01001) | - | 785918..786337 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| NGFG_RS12890 (NGFG_01000) | - | 786847..787308 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| NGFG_RS04195 (NGFG_00999) | - | 787278..787799 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| NGFG_RS15910 (NGFG_00998) | traA | 787927..788106 (+) | 180 | WP_229694448.1 | TraA family conjugative transfer protein | - |
| NGFG_RS04205 (NGFG_00997) | traL | 788169..788450 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| NGFG_RS04210 (NGFG_00996) | - | 788447..789112 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| NGFG_RS04215 (NGFG_00995) | - | 789114..789848 (+) | 735 | WP_003695279.1 | TraK domain-containing protein | - |
| NGFG_RS04220 (NGFG_00994) | - | 789850..791163 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| NGFG_RS04225 (NGFG_00993) | - | 791173..791892 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| NGFG_RS04230 (NGFG_00992) | - | 791889..792470 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| NGFG_RS04235 (NGFG_00991) | traC | 792480..795056 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| NGFG_RS04240 (NGFG_00990) | - | 795084..795632 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| NGFG_RS04245 (NGFG_00989) | - | 795632..796177 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| NGFG_RS04250 (NGFG_00988) | - | 796186..796842 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| NGFG_RS04255 (NGFG_00987) | - | 796839..797957 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| NGFG_RS04260 (NGFG_00986) | trbC | 797972..798724 (+) | 753 | WP_003695264.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NGFG_RS04265 (NGFG_00985) | - | 798721..799965 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| NGFG_RS04270 (NGFG_00984) | traN | 800004..801545 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| NGFG_RS04275 (NGFG_00983) | - | 801532..801957 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| NGFG_RS04280 (NGFG_00982) | - | 801969..802745 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| NGFG_RS04285 (NGFG_00981) | - | 802917..804422 (+) | 1506 | WP_017147074.1 | conjugal transfer protein TraH | - |
| NGFG_RS04290 (NGFG_00980) | - | 804429..807431 (+) | 3003 | WP_003695257.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=61712 NGFG_RS04110 WP_003688652.1 767553..769298(+) (recD) [Neisseria gonorrhoeae MS11]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=61712 NGFG_RS04110 WP_003688652.1 767553..769298(+) (recD) [Neisseria gonorrhoeae MS11]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCTTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |