Detailed information NTG0617074

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: NUU05_RS00930
• Genome accession: NZ_CP102538
• Coordinates: 162956..164056 (-)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain TH-4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 157956..169056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUU05_RS00915 (NUU05_00910)	-	158807..159679 (-)	873	WP_011681764.1	YitT family protein	-
NUU05_RS00920 (NUU05_00915)	trpS	160107..161129 (+)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
NUU05_RS00925 (NUU05_00920)	guaB	161306..162787 (+)	1482	WP_011227627.1	IMP dehydrogenase	-
NUU05_RS00930 (NUU05_00925)	recF	162956..164056 (-)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
NUU05_RS00935 (NUU05_00930)	yaaA	164059..164436 (-)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
NUU05_RS00940 (NUU05_00935)	yfmF	164514..165764 (+)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
NUU05_RS00945 (NUU05_00940)	yfmH	165766..167043 (+)	1278	WP_011681761.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
NUU05_RS00950 (NUU05_00945)	-	167102..167959 (+)	858	WP_011681760.1	helix-turn-helix transcriptional regulator	-
NUU05_RS00955 (NUU05_00950)	pgsA	167972..168514 (+)	543	WP_011681759.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=617074 NUU05_RS00930 WP_002947786.1 162956..164056(-) (recF) [Streptococcus thermophilus strain TH-4]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=617074 NUU05_RS00930 WP_002947786.1 162956..164056(-) (recF) [Streptococcus thermophilus strain TH-4]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432