Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LJA38_RS17555 Genome accession   NZ_CP085283
Coordinates   3590997..3592142 (+) Length   381 a.a.
NCBI ID   WP_088037228.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3585997..3597142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS17535 - 3586471..3587187 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  LJA38_RS17540 narK 3587285..3588475 (-) 1191 WP_003151073.1 nitrate transporter NarK -
  LJA38_RS17545 argS 3588610..3590280 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  LJA38_RS17550 - 3590277..3590705 (-) 429 WP_003151069.1 DUF1934 family protein -
  LJA38_RS17555 rapF 3590997..3592142 (+) 1146 WP_088037228.1 tetratricopeptide repeat protein Regulator
  LJA38_RS17560 - 3592126..3592245 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  LJA38_RS17565 - 3592443..3592646 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  LJA38_RS17570 - 3592660..3592863 (+) 204 WP_003151062.1 hypothetical protein -
  LJA38_RS17575 - 3592898..3593083 (+) 186 Protein_3413 DUF4177 domain-containing protein -
  LJA38_RS17580 - 3593271..3593552 (+) 282 WP_014306021.1 hypothetical protein -
  LJA38_RS17585 - 3593596..3594108 (+) 513 WP_032859656.1 stage II sporulation protein M -
  LJA38_RS17590 - 3594699..3594917 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  LJA38_RS17595 speB 3595087..3595959 (-) 873 WP_003151054.1 agmatinase -
  LJA38_RS17600 speE 3596019..3596849 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45325.46 Da        Isoelectric Point: 4.9264

>NTDB_id=617006 LJA38_RS17555 WP_088037228.1 3590997..3592142(+) (rapF) [Bacillus velezensis strain TPS3N]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=617006 LJA38_RS17555 WP_088037228.1 3590997..3592142(+) (rapF) [Bacillus velezensis strain TPS3N]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53