Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LJA38_RS12900 Genome accession   NZ_CP085283
Coordinates   2679658..2680410 (-) Length   250 a.a.
NCBI ID   WP_069448914.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2674658..2685410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS12875 mreC 2675094..2675957 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  LJA38_RS12880 mreB 2675988..2677001 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  LJA38_RS12885 radC 2677093..2677788 (-) 696 WP_003152646.1 DNA repair protein RadC -
  LJA38_RS12890 - 2677820..2678389 (-) 570 WP_003152645.1 Maf family protein -
  LJA38_RS12895 - 2678530..2679531 (-) 1002 WP_069448913.1 SPOR domain-containing protein -
  LJA38_RS12900 comC 2679658..2680410 (-) 753 WP_069448914.1 A24 family peptidase Machinery gene
  LJA38_RS12905 - 2680550..2681842 (-) 1293 WP_052586400.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LJA38_RS12910 - 2681901..2684543 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  LJA38_RS12915 - 2684996..2685187 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27180.86 Da        Isoelectric Point: 9.2521

>NTDB_id=616989 LJA38_RS12900 WP_069448914.1 2679658..2680410(-) (comC) [Bacillus velezensis strain TPS3N]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAVRGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=616989 LJA38_RS12900 WP_069448914.1 2679658..2680410(-) (comC) [Bacillus velezensis strain TPS3N]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGTCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588