Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LJA38_RS12110 Genome accession   NZ_CP085283
Coordinates   2531244..2532011 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2526244..2537011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS12090 - 2526446..2527258 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LJA38_RS12095 ccpN 2527284..2527922 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LJA38_RS12100 glyS 2528023..2530062 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  LJA38_RS12105 glyQ 2530055..2530942 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LJA38_RS12110 recO 2531244..2532011 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LJA38_RS12115 - 2532048..2532191 (-) 144 WP_007408286.1 YqzL family protein -
  LJA38_RS12120 era 2532347..2533252 (-) 906 WP_003152978.1 GTPase Era -
  LJA38_RS12125 - 2533233..2533643 (-) 411 WP_003152976.1 cytidine deaminase -
  LJA38_RS12130 - 2533767..2534141 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LJA38_RS12135 ybeY 2534122..2534595 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LJA38_RS12140 - 2534596..2536728 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=616982 LJA38_RS12110 WP_003152982.1 2531244..2532011(-) (recO) [Bacillus velezensis strain TPS3N]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=616982 LJA38_RS12110 WP_003152982.1 2531244..2532011(-) (recO) [Bacillus velezensis strain TPS3N]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894