Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LJA38_RS11850 Genome accession   NZ_CP085283
Coordinates   2485288..2486325 (-) Length   345 a.a.
NCBI ID   WP_024085602.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480288..2491325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS11800 tasA 2480523..2481308 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  LJA38_RS11805 sipW 2481372..2481956 (-) 585 WP_012117977.1 signal peptidase I SipW -
  LJA38_RS11810 tapA 2481928..2482599 (-) 672 WP_063174755.1 amyloid fiber anchoring/assembly protein TapA -
  LJA38_RS11815 - 2482858..2483187 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  LJA38_RS11820 - 2483227..2483406 (-) 180 WP_003153093.1 YqzE family protein -
  LJA38_RS11825 comGG 2483463..2483840 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  LJA38_RS11830 comGF 2483841..2484341 (-) 501 WP_232789965.1 competence type IV pilus minor pilin ComGF -
  LJA38_RS11835 comGE 2484250..2484564 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  LJA38_RS11840 comGD 2484548..2484985 (-) 438 WP_095318402.1 competence type IV pilus minor pilin ComGD Machinery gene
  LJA38_RS11845 comGC 2484975..2485283 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LJA38_RS11850 comGB 2485288..2486325 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  LJA38_RS11855 comGA 2486312..2487382 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  LJA38_RS11860 - 2487574..2488524 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  LJA38_RS11865 - 2488670..2489971 (+) 1302 WP_014305416.1 hemolysin family protein -
  LJA38_RS11870 - 2490009..2490839 (-) 831 WP_003153080.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39618.91 Da        Isoelectric Point: 9.5658

>NTDB_id=616980 LJA38_RS11850 WP_024085602.1 2485288..2486325(-) (comGB) [Bacillus velezensis strain TPS3N]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPYYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=616980 LJA38_RS11850 WP_024085602.1 2485288..2486325(-) (comGB) [Bacillus velezensis strain TPS3N]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCAGGCTGAGGGAAGGTGATGCGTTTTACGAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCAGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTCATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTATTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.635

93.623

0.614